PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133064001
Common NameGSBRNA2T00133064001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 279aa    MW: 32033.3 Da    PI: 9.1756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133064001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0594117123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C  C k+F+r+ +L+ H++  H
  GSBRNA2T00133064001  94 HRCVACFKMFNRRQHLVEHMKIsH 117
                          79*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.2494123IPR007087Zinc finger, C2H2
SMARTSM003550.1994117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM0035525123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
SMARTSM0035514160183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.420.108.2E-10215263IPR012337Ribonuclease H-like domain
SuperFamilySSF530985.06E-5216264IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MPKKSVHYYL WKQHAKRGEK IEGEISWVEN RKGGNFRQIF QKRKNTNLNT RKKVVQSDTN  60
RRRVKQMIVE GVERIVLIRL IARERGLIME PCRHRCVACF KMFNRRQHLV EHMKISHHSL  120
HQPRCGVCFK HCKSFESVRE HLNVPDHLFK GDCKSIFSER GCTLCLRIFE DATALADHKN  180
KCHLSAPLPL VIFALDIYSS QVTPTRTLGV NTRLKAVAID CEMVGGGDDG STDLCASICL  240
VDEDEHVIFS THVQPQLPVT DYRYCLCLPC ASLFTLFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133064001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896341e-145AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142478.11e-112PREDICTED: RNA exonuclease 4
TrEMBLA0A3P5Z0U50.0A0A3P5Z0U5_BRACM; Uncharacterized protein
STRINGBra004414.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125322
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]