PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133340001
Common NameGSBRNA2T00133340001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 396aa    MW: 46034.8 Da    PI: 5.6647
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133340001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.49.9e-22101554128
                  NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyW 83 
                          G++F+P d+el+++yL +k++gk++++   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+ +r +t+   sg W
  GSBRNA2T00133340001  10 GIQFQPYDDELINQYLIPKLKGKPCRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKVKRkITRdddSGSW 96 
                          99**********************888...9999**********86444444889*****999776553333567777745556679*** PP

                  NAM  84 katgkdkevlsk.kgelvglkktLvfy..............kgrapkgektdWvmheyrl 128
                          ++  k +++++k +++++g+k++L f               +  + +g + +W+m ey l
  GSBRNA2T00133340001  97 RTNAK-EDITDKeTKKTIGVKQSLNFVrrnvnnkklkrgdgTSCDVSGDSESWIMTEYML 155
                          97776.66666648889**********7777666555443224566788999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4767173IPR003441NAC domain
SuperFamilySSF1019412.62E-229171IPR003441NAC domain
PfamPF023651.8E-1510154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MYEYNDEDGG IQFQPYDDEL INQYLIPKLK GKPCREITMK DVYSKEPWLL DHPMGSFFKK  60
NEWYYFVTRT QLSKKKIGCG KKVKRKITRD DDSGSWRTNA KEDITDKETK KTIGVKQSLN  120
FVRRNVNNKK LKRGDGTSCD VSGDSESWIM TEYMLPEEKG KFHELVICKI HVIKNSKKKD  180
DDHNEACTSS NHHHYVSSLL RIYSRFKQLQ HPINEAHRHE ASTYHHHPID QPINIVDQEI  240
FLAPILEQQP INIVDQEVFL SPFLEQTNIF DQEIFLSPFL KEQPTNIACN IQENNKDDHE  300
ALIPYHHHEF AADCYTEQQP INESHGHVPK IPLIGSEQEA EIEEIQELIN SLATVNVSSL  360
PMEEDDNILN YDAQFIYQDL LESVCYPPPP PPRKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133340001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608285.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3P6CI020.0A0A3P6CI02_BRACM; Uncharacterized protein
STRINGBo9g135860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-11NAC domain containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]