PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133341001
Common NameGSBRNA2T00133341001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 420aa    MW: 48393.6 Da    PI: 4.5427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133341001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.22.2e-12101274128
                  NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                          G++F+P d+el++eyL +k+egk+ ++   i+  d+y+ ePw L++             + +k     ++ +r  +sg Wka  kd    
  GSBRNA2T00133341001  10 GIQFQPYDDELINEYLIPKLEGKPRRE---ITMKDVYSKEPWLLDH-------------PMAK-----RKITRDDDSGSWKANSKDDITD 78 
                          99**********************766...9999**********72.............2222.....245677889******9977666 PP

                  NAM  94 skkgelvglkktLvfy.......kgrapkge.........ktdWvmheyrl 128
                          ++k+ ++g k+tL+f        k  +++g          + +W+m ey l
  GSBRNA2T00133341001  79 KEKKMVIGEKQTLAFVkskvnnkK--QKSGDgtscnvsrdSESWIMTEYML 127
                          668889**********66555331..2222233444444467899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.0617145IPR003441NAC domain
SuperFamilySSF1019413.27E-179143IPR003441NAC domain
PfamPF023651.7E-1210126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MYEYNDEDGG IQFQPYDDEL INEYLIPKLE GKPRREITMK DVYSKEPWLL DHPMAKRKIT  60
RDDDSGSWKA NSKDDITDKE KKMVIGEKQT LAFVKSKVNN KKQKSGDGTS CNVSRDSESW  120
IMTEYMLPEE KGKFHELVIC KIHVIKNSKK KDDDHNEACT SSNHHHYVSV LASSFSDQQL  180
QHPINEAQLH EASTYLNHID SSTSERPPIN IADRGTLLAP YLEQQPINIV DHRTFLAPYL  240
EQQPINIFDH GTFLAPYLEQ QPMNLYDVSV PASFSFEQQP TNGICTIQEN HNKDDHEAFI  300
PHHYGFLADY SAMQQPVNEA HRHVTEIPLI GSENNDQVFE ASRQVSEKDE QLYIDAPIEE  360
EGGEWFQGFV NELKTMNTSS MPMEEDVDTM MIYDKPWIDQ DSLDQYATLR PQERSESEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133341001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.10.0PREDICTED: uncharacterized protein LOC108824593
TrEMBLA0A0D3ECL30.0A0A0D3ECL3_BRAOL; Uncharacterized protein
STRINGBo9g135820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.25e-12NAC domain containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]