PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00133354001

Common Name

GSBRNA2T00133354001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 302aa MW: 35062.8 Da PI: 8.5297

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00133354001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.5e-16	16	58	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kRr+ + KKA E S+LC+++ ++i++++t GSBRNA2T00133354001 16 RITNDKTRMTTYKKRRACLYKKAGEFSTLCGVQTCIILYGPTK 58 89**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-11	6	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-7	9	29	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.06E-22	10	87	No hit	No description
SuperFamily	SSF55455	3.92E-17	12	94	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.087	12	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-16	16	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-7	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-7	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRVQKMAHEK VVDLQRITND KTRMTTYKKR RACLYKKAGE FSTLCGVQTC IILYGPTKAT 60 DEVISKPEIW PEDETKARDI IRRYRDTVSN SCRKEAHVET FVNDKGKAKE TENTNNNNKR 120 GMNNKNKYCC WEERLEKCSQ EQLRGIFDDV GNKLHEAIMR QNRNAITAQH QVMEPQTPQN 180 LMDPYYVSQY FAGHQQQQCL MFPYNNMSFP LFSPHDDQIP MEPILVENFA DSGVNQGFMM 240 SKGNESTQFM QRQAPYYIEP VVQRPASFNV NPFTGYQVPY NIPRLPGNQA EVWDFMAKKP 300 I*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00133354001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013654321.2	0.0	agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-123	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	A0A3P6E8N1	0.0	A0A3P6E8N1_BRAOL; Uncharacterized protein
STRING	Bo9g135720.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-119	AGAMOUS-like 82

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]