PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133442001
Common NameGSBRNA2T00133442001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 315aa    MW: 35371.3 Da    PI: 9.4328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133442001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-14105149347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ + +++G+g+W++I+r++  +Rt+ q+ s+ qky
  GSBRNA2T00133442001 105 AWTPDEHSQFLIGLEKYGKGDWRSISRHLVVTRTPTQVASHAQKY 149
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.112862IPR017884SANT domain
SMARTSM007173.5E-7961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-41060IPR009057Homeodomain-like
SuperFamilySSF466892.51E-111167IPR009057Homeodomain-like
CDDcd001674.63E-71259No hitNo description
SuperFamilySSF466892.92E-1698155IPR009057Homeodomain-like
PROSITE profilePS5129417.69398154IPR017930Myb domain
SMARTSM007173.8E-10102152IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-15102152IPR006447Myb domain, plants
CDDcd001678.13E-10105150No hitNo description
PfamPF002495.3E-12105149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10105149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSIGEKTSGG SSWSRDDDIA FEKALAIYAD ETENRWEKIA GFVHGKTLEQ VLKRYEVLLR  60
DVMMIESSYV SLPEYDSSEG THAKDTNISE YGIINRTCER RKGIAWTPDE HSQFLIGLEK  120
YGKGDWRSIS RHLVVTRTPT QVASHAQKYF SRLNSKNKNK TRQRIHDRDV GSSNTSAMQS  180
PNTWQNTQAT SQPSQDHHPT YSTPTLWNTQ ATLQQSQDHP MYGTPTKWNM QAASQPSVNI  240
PIYGTHTVNQ SMVGRMVSPF GSNMNRLAPP HIFYGVQHHS APYSSVSRAP YSSVPSAPFN  300
MAASYNMTYA PTSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-131085883RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133442001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597275.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_022561755.10.0transcription factor SRM1-like
TrEMBLA0A0D3DDA00.0A0A0D3DDA0_BRAOL; Uncharacterized protein
STRINGBo7g097510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-107Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]