PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133482001
Common NameGSBRNA2T00133482001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 314aa    MW: 35391.9 Da    PI: 6.6987
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133482001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY833e-26121183159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                          ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e+ ++ +ei Y+g H ++
  GSBRNA2T00133482001 121 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSNENHQMlFEISYRGIHSCS 183
                          59***************************98889***********99987479*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-25118184IPR003657WRKY domain
SuperFamilySSF1182902.09E-22120184IPR003657WRKY domain
SMARTSM007741.2E-37121184IPR003657WRKY domain
PROSITE profilePS5081119.187121171IPR003657WRKY domain
PfamPF031063.4E-25122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MERKSNSGEW EKMKKEISEL MTEGRDYVHE LKSQLGSSSS DQESREHLAK KILESYHKSL  60
TIMNHSGELD QVSPHIHGGG SPKSDDSDQE PHQNMKSSKK SMPRWTEKVR ITPGAEIDRT  120
LDDGFSWRKY GQKDILGAKF PRGYYRCTYR KSQGCEATKQ VQRSNENHQM LFEISYRGIH  180
SCSQAANVRS AIPVRVLEPN QPQEHENLEM VKESLDAGHH NYNHQAHLHQ TLQYHLSSTP  240
TLESNNMMLQ LADQNIDLFG STSFSSDLGA NANYDYLASH NVGSVSHSTS NSPSESPFES  300
FDPNNPFKGF GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-181211801474Disease resistance protein RRS1
5w3x_D1e-181211801474Disease resistance protein RRS1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133482001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596670.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ9FL621e-156WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLA0A3P6E5D10.0A0A3P6E5D1_BRAOL; Uncharacterized protein
STRINGBo7g097170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-145WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  3. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]