PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133732001
Common NameGSBRNA2T00133732001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 148aa    MW: 16844 Da    PI: 10.9087
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133732001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.58.8e-145787535
                 GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         +ttkTp+WR gp+ +k+LCnaCG++ rk+++
  GSBRNA2T00133732001 57 KTTKTPMWRGGPSCPKSLCNACGIRLRKQRR 87
                         79**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.94E-94687No hitNo description
SMARTSM004017.8E-1147103IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.174783IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-105187IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-115787IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MYDIKKKEGL YMTKSKRRKQ PCHSFSIVLG VLWYSKGALI TKMEEEKKTV RCCSERKTTK  60
TPMWRGGPSC PKSLCNACGI RLRKQRRSEL LGIRIIHSHK AYKKINPSPS SLSFSHGGVF  120
LKKRRILKEE EQAALCLLLL SRNSAFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418KKKEGLYMTKSKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133732001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597259.17e-71PREDICTED: GATA transcription factor 23-like
SwissprotQ8LC598e-39GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A3P5YXM21e-69A0A3P5YXM2_BRACM; Uncharacterized protein
STRINGXP_006394919.14e-47(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144841622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.16e-37GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]