PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00133747001

Common Name

GSBRNA2T00133747001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 276aa MW: 30488.7 Da PI: 5.0734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00133747001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H GSBRNA2T00133747001 85 YTCQFCSKGFSTTQALGGHQNAH 107 9*******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.31E-7	81	113	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.1E-4	83	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MENEVMSSAS SSSPQPETSK DTIVAVEESN EKATENNNNL SLVPSDQEVM SERRSENPSL 60 GLGSGAVRTG TEMTMLYPSR SNKIYTCQFC SKGFSTTQAL GGHQNAHKHD REWEKKRKEM 120 EEDFPGLSFL NRYIDKPHLL LGGYSEDALS NDNHLGITLE SFKRRGSGGV YPSFNSGVGP 180 MNMIAPRMAP TRFFTGNTFT DGSSSRGLGP RPTYAPMFPR NVPPFLRPRS TNLPRNLYPQ 240 GNRVGEKDNV VVIDDDDDDE PDEDNPKSWG KDLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00133747001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013645989.2	1e-178	uncharacterized protein LOC106350687
TrEMBL	A0A0D3DCI3	1e-175	A0A0D3DCI3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EH55	1e-175	A0A3P6EH55_BRAOL; Uncharacterized protein
STRING	Bo7g094840.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	2e-79	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]