PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00133776001

Common Name

GSBRNA2T00133776001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 956aa MW: 106797 Da PI: 9.0912

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00133776001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	38	72	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ E e++++a +++G + Wk++a+ + +R++ GSBRNA2T00133776001 38 QWTKGELERFYEAYRKHGRD-WKKVAAAVRSNRSAD 72 6***************77.****999888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.28E-7	37	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-4	38	74	IPR009057	Homeodomain-like
Pfam	PF00249	7.2E-7	38	74	IPR001005	SANT/Myb domain
CDD	cd00167	0.00335	39	74	No hit	No description
SMART	SM01135	1.8E-52	551	652	IPR033471	DIRP domain
Pfam	PF06584	2.3E-29	551	651	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MAPRSVNKRV VTKEASSSPE IDKVKQRKKK LTDKLGPQWT KGELERFYEA YRKHGRDWKK 60 VAAAVRSNRS ADMVEALFSM NRAYLSLPEG TASVAGLIAM MTDHYSVIEE SESEGEGRVD 120 SGVLRKYQKR KRAKVPPSDV REEVISPHSI ASMEGCLSFL KQAQVYGRER RATGKRTPRF 180 LVPSADQRDD TEGSMPLNKR AKKQLEADAD ADDDILALAL ANASRRVGGS PNRRPGSTPN 240 VKMSQAKEAQ SKHHASSMSR NVVRISRDRR HIRGSPDRDG ALLMDTERVG NAEVPRKEKN 300 VRIVEAEGDT SDDSGEACNA PRDGLEALHA LADLSALLTP GGLMESESSA ELKEERVANT 360 RETVSSSHNR EKAKQAGRED HSVLHVISAA DSRKPKSAQE LVDGNAVPIG ELDTSRRKRK 420 PLHNKESAED DNLKTLLNPR RAGQGPVKQQ KTAKTSEESC STSDKKITRP NEAVSATRVS 480 GSGPASLPQK PPNRRKISLK KSLQERTKSS EATHNKSHSN EAEPHHELLK EKVSTCLSHP 540 LVRRRCIFEW FYSAIDYPWF AKMEFVDYLN HVGLGHVPRL TRLEWSVIKS SLGRPRRFSE 600 RFVHEERDKL EQYRESVRKQ YTELRAGARE VIHTDLAQPL SVGNRVIAIH PKTREIRDGK 660 ILTVDHNKYN VLFDELGVEV VMDIDCMPLN PLEYTPDGLR RQMDNCLTVC GEAQVRKHPS 720 SDASVLFTPS ELENVDFSMS PTKKEDDRDR RVTTDQTYNT DNIKARRDEI QRALMLQRTS 780 DAQEMEPEMV GIVSGSRSIA QALVDAAMKA ASSGKDDEDA GKMLQQALDS IGEHHQPLDN 840 SIVSRMKHQD QANGSWDHHQ NRSPSNTGEA MTEGLMGSGK NETQMASELI SSCVATWLMI 900 QKCTEKQYPP GDVAQVMETA VSSLQPRCPQ NMPIYREIQT CMGWIKNQIM ALVKT*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MAPRSVNKRV VTKEASSSPE IDKVKQRKKK LTDKLGPQWT KGELERFYEA YRKHGRDWKK  60
VAAAVRSNRS ADMVEALFSM NRAYLSLPEG TASVAGLIAM MTDHYSVIEE SESEGEGRVD  120
SGVLRKYQKR KRAKVPPSDV REEVISPHSI ASMEGCLSFL KQAQVYGRER RATGKRTPRF  180
LVPSADQRDD TEGSMPLNKR AKKQLEADAD ADDDILALAL ANASRRVGGS PNRRPGSTPN  240
VKMSQAKEAQ SKHHASSMSR NVVRISRDRR HIRGSPDRDG ALLMDTERVG NAEVPRKEKN  300
VRIVEAEGDT SDDSGEACNA PRDGLEALHA LADLSALLTP GGLMESESSA ELKEERVANT  360
RETVSSSHNR EKAKQAGRED HSVLHVISAA DSRKPKSAQE LVDGNAVPIG ELDTSRRKRK  420
PLHNKESAED DNLKTLLNPR RAGQGPVKQQ KTAKTSEESC STSDKKITRP NEAVSATRVS  480
GSGPASLPQK PPNRRKISLK KSLQERTKSS EATHNKSHSN EAEPHHELLK EKVSTCLSHP  540
LVRRRCIFEW FYSAIDYPWF AKMEFVDYLN HVGLGHVPRL TRLEWSVIKS SLGRPRRFSE  600
RFVHEERDKL EQYRESVRKQ YTELRAGARE VIHTDLAQPL SVGNRVIAIH PKTREIRDGK  660
ILTVDHNKYN VLFDELGVEV VMDIDCMPLN PLEYTPDGLR RQMDNCLTVC GEAQVRKHPS  720
SDASVLFTPS ELENVDFSMS PTKKEDDRDR RVTTDQTYNT DNIKARRDEI QRALMLQRTS  780
DAQEMEPEMV GIVSGSRSIA QALVDAAMKA ASSGKDDEDA GKMLQQALDS IGEHHQPLDN  840
SIVSRMKHQD QANGSWDHHQ NRSPSNTGEA MTEGLMGSGK NETQMASELI SSCVATWLMI  900
QKCTEKQYPP GDVAQVMETA VSSLQPRCPQ NMPIYREIQT CMGWIKNQIM ALVKT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00133776001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022561907.1	0.0	LOW QUALITY PROTEIN: protein ALWAYS EARLY 1-like
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A3P6F0A5	0.0	A0A3P6F0A5_BRAOL; Uncharacterized protein
STRING	Bo7g093690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-72	DNA binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]