PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00133835001
Common NameGSBRNA2T00133835001, LOC106348645, LOC106382224
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 412aa    MW: 44855 Da    PI: 4.6007
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00133835001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.14.7e-37118215297
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f
  GSBRNA2T00133835001 118 LFQRLWTDEDEIELLRGFLDYiATHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATF 207
                          79*******************8899***99999********************************************************* PP

               DUF573  90 elskkiWg 97 
                          ++s+kiW+
  GSBRNA2T00133835001 208 DISRKIWN 215
                          *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-33119215IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSPSDEREAV FSLESPELEQ DGGAGGGGET DSDEEAVMPE PNAPDEDDDH EYEDLNSPLV  60
TVTAKSSSAA TDTVTVALPA GSAVPVSSIP ADSDPKWHRT TEIVHLRPPP PLDDSRRLFQ  120
RLWTDEDEIE LLRGFLDYIA THRGTSSHPP DTAPFYEQIK SKLQLEFNKN QLVEKLRRLK  180
KKYRNVMSKF SSGKEVVFKS SHDQATFDIS RKIWNPTGKI IGFEDNNVME FEETNGNNAH  240
VEVDSENVLE KKVTVSSGSR KRPRSRIGKI DEDKAVSLSD GPVPSVNLNE NVPAFGEFGD  300
GRNLGGLIEE TVKSCVSPLI KEMMDGTTGM MMAAVGGFPG GGGAHAMGVL SPMLMPSVNL  360
GGFGGGNGGV GDERWRRQQI LELEVYSRRL ELVQEQIRAT VNELKTMPSG G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.63650.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00133835001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643866.10.0probable transcription factor At5g28040
RefseqXP_022552871.10.0probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A3P6E4K60.0A0A3P6E4K6_BRAOL; Uncharacterized protein
STRINGBo7g093330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-171DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]