PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134245001

Common Name

GSBRNA2T00134245001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 270aa MW: 30419.7 Da PI: 4.4274

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134245001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	213	266	1	45
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwq 45 r+ WT+eE+e l +vk++ + W++I ++ + +Rt+ ++k++w+ GSBRNA2T00134245001 213 RLLWTPEEEEMLRMGVKKFAAEankniPWRKILEMGQtvfqPTRTPADLKDKWR 266 677****************************9999**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.317	208	269	IPR017877	Myb-like domain
SuperFamily	SSF46689	8.22E-9	212	267	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-9	213	267	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-6	215	267	IPR001005	SANT/Myb domain
CDD	cd11660	4.56E-9	216	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MKTKSFPERF GSIETDPDTV RPLKKRQCPL GEDKPLKSDD ACIVCEVSEE GASSCCGVDC 60 LLRFHEECLT PEFGGSEDLS NPLCPYCWFR VVALKSKSLR EEAVSAENAV YKYLDKDTVS 120 GQGLQGGDRA ECSSSKEDQF DNSSHQPEEG TDMEEEDKVI EDVVEASAED GERVDADHDE 180 SAQVQTNEED VSEHVASQPN TLRAFSFFNK NRRLLWTPEE EEMLRMGVKK FAAEANKNIP 240 WRKILEMGQT VFQPTRTPAD LKDKWRRQH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14388	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134245001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013672657.1	0.0	uncharacterized protein BNAC03G01040D
TrEMBL	A0A3P6A6Z9	0.0	A0A3P6A6Z9_BRAOL; Uncharacterized protein
STRING	Bo3g002160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27

Link Out ? help Back to Top
Entrez Gene	106377049

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]