PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134267001

Common Name

GSBRNA2T00134267001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 255aa MW: 27891.5 Da PI: 8.42

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134267001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H GSBRNA2T00134267001 162 HECSICKAEFSSGQALGGHMRRH 184 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.61E-9	110	184	No hit	No description
Pfam	PF13912	1.6E-11	110	135	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.575	111	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.061	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.6E-4	159	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-12	161	186	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.328	162	189	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	162	184	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MTSVHEETRL VLLIKGKRTK RQRSASPHIK AEVMSSVCNE ERSLEAREEG AGEIEFRGAT 60 DEDQDMANCL MLLSQGHKSN TSGDPLLTQK IGFLSNKKPV ASLGLGINGV YQCKTCDKSF 120 HSFQALGGHR TSHKKPKLGA IVLKCDEKKS ASDGSKKQEK THECSICKAE FSSGQALGGH 180 MRRHRGLTLN ANANSTIRTA TSSSHNQESI RENNFMELDL NLPAPEDEPK FVFASKDQII 240 LFTAASNSLI DCHH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134267001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232522	0.0	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022553406.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A0D3AZK2	1e-180	A0A0D3AZK2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ACN2	1e-180	A0A3P6ACN2_BRAOL; Uncharacterized protein
STRING	Bo3g002370.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	1e-133	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]