PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134427001

Common Name

GSBRNA2T00134427001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 276aa MW: 31713.5 Da PI: 9.8477

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134427001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.6	4.4e-32	44	150	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae++ ++ e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+ D+v F GSBRNA2T00134427001 44 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnttisDNADEKGTLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFF 133 99***************************99966667899********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 +++++++++l+++++r+ GSBRNA2T00134427001 134 QRQRSDSRRLFIGWRRR 150 99889999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.4E-40	38	157	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-29	39	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-25	43	141	No hit	No description
SMART	SM01019	4.7E-23	44	151	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.563	44	151	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-29	44	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSVNHYSTDN HHALFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV 60 IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV 120 KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA 180 HSEYSHYGIK LTTLYTNIYI FHIRKYRYKE TISLLQKKLN KKSAILYKGI SFATAAAAES 240 TTTKTCTIIT LLTPQPHNMN IGFTGDTMKQ VEDRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-50	40	150	4	113	B3 domain-containing transcription factor NGA1
5os9_B	9e-50	40	150	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134427001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB006700	2e-74	AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBank	CP002688	2e-74	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628242.1	1e-150	PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
Refseq	XP_013722542.1	1e-150	B3 domain-containing protein At5g06250-like isoform X2
Swissprot	Q9FNI3	2e-90	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	A0A0D3AZZ5	1e-148	A0A0D3AZZ5_BRAOL; Uncharacterized protein
STRING	Bo3g003800.1	1e-149	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	2e-85	B3 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]