PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134448001
Common NameGSBRNA2T00134448001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29354.3 Da    PI: 10.0185
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134448001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18110164256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +k+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  GSBRNA2T00134448001 110 KKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 164
                          788899***********************************************98 PP
2HD-ZIP_I/II129.11.8e-41110200192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eLr +
  GSBRNA2T00134448001 110 KKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTDENRRLQKEVKELR-A 198
                          59*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  GSBRNA2T00134448001 199 LK 200
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.006106166IPR001356Homeobox domain
SMARTSM003892.4E-16108170IPR001356Homeobox domain
SuperFamilySSF466895.13E-18109175IPR009057Homeodomain-like
PfamPF000462.2E-15110164IPR001356Homeobox domain
CDDcd000861.88E-15110167No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17115164IPR009057Homeodomain-like
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
SMARTSM003405.1E-26166209IPR003106Leucine zipper, homeobox-associated
PfamPF021837.4E-11166200IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGLDVLGFGS QRSLSSSSSP SVEDEKKYKS KLTQRANYSD GVRVSSSVDP SLQLQLHLPW  60
IPENRAPTVA EPSMPVSPPD SVTSSFRLDF GIKSYGYEKR NNKRDMEDEK KKLRLSKDQS  120
AFLEDSFKEH NTLNPKQKIA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKKCCE  180
SLTDENRRLQ KEVKELRALK TSSPFYMQRP ATTLTMCPSC ERVATSSSQP STSAAHIDLS  240
TSSFHSPLIP VKPGPAKQVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134448001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893671e-159AC189367.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046M04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130954.11e-178PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-126HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A3P6ADL90.0A0A3P6ADL9_BRAOL; Uncharacterized protein
STRINGBra005907.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-117homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]