PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134529001

Common Name

GSBRNA2T00134529001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 506aa MW: 55268.3 Da PI: 7.4085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134529001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.9	1.8e-18	269	318	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq GSBRNA2T00134529001 269 RSKHSATEQRRRSKINDRFQKLRQLVPNS----DQKRDKASFLLEVIEYIQFLQ 318 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-23	265	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.574	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-19	268	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-14	269	320	No hit	No description
Pfam	PF00010	6.0E-16	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-13	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HAGSHLKTHD FLQPLESVGG 60 SKEETSRIDT TSEPPAPPPP LKHVLPGGIG TYTISSIPYF HNHQRVPKPE LSPPMMFTAS 120 GGGGGGGGVE RNVVDAAAVA SGLTLWDESG SGTKGQTRKE NNAGERANIR ADAATTIGQW 180 PAQSLTNNNP LSGFSSRSSS QGSGLKSQSF MDMIRSAKGT SQDDDLDDED DFFMKKESSS 240 TSQIRTVDMR VKAEARGAGN NDPKMNTPRS KHSATEQRRR SKINDRFQKL RQLVPNSDQK 300 RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNQEPAKLLN WQRNNQQLVP EGTVAFAPKL 360 EEEKNNIPIL ATAETLNRVT PFPLSVQSNS LFSPVIAGNP LTQLHARVVA SESSPSSRSH 420 TQPLKEGGGE EEEEEQGDDE EGREGNISIS SVYSQGLVKR LREALEKSGV DITKATISVE 480 IELAKRSSEV KQTRKPKRLK TCNTS*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MELPQPRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS HAGSHLKTHD FLQPLESVGG  60
SKEETSRIDT TSEPPAPPPP LKHVLPGGIG TYTISSIPYF HNHQRVPKPE LSPPMMFTAS  120
GGGGGGGGVE RNVVDAAAVA SGLTLWDESG SGTKGQTRKE NNAGERANIR ADAATTIGQW  180
PAQSLTNNNP LSGFSSRSSS QGSGLKSQSF MDMIRSAKGT SQDDDLDDED DFFMKKESSS  240
TSQIRTVDMR VKAEARGAGN NDPKMNTPRS KHSATEQRRR SKINDRFQKL RQLVPNSDQK  300
RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNQEPAKLLN WQRNNQQLVP EGTVAFAPKL  360
EEEKNNIPIL ATAETLNRVT PFPLSVQSNS LFSPVIAGNP LTQLHARVVA SESSPSSRSH  420
TQPLKEGGGE EEEEEQGDDE EGREGNISIS SVYSQGLVKR LREALEKSGV DITKATISVE  480
IELAKRSSEV KQTRKPKRLK TCNTS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134529001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	1e-171	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680368.1	0.0	transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A397ZRA1	0.0	A0A397ZRA1_BRACM; Uncharacterized protein
STRING	Bra005969.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]