PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00134540001

Common Name

GSBRNA2T00134540001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 181aa MW: 18821.1 Da PI: 11.0722

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00134540001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.1	2.1e-40	27	141	2	110
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + GSBRNA2T00134540001 27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPFA--Lgkr 113 79*******************************************************************777.22333332221..0224 PP TCP 89 .....kaaksaa.kskksqksaasalnl 110 + ++++ ++++q++a++a ++ GSBRNA2T00134540001 114 gvragEGEAATLfVRQQQQQQASAAAAM 141 5666633333332333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.59	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.0E-33	33	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFAL GKRGVRAGEG 120 EAATLFVRQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDNPR 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00134540001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189332	1e-112	AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630257.1	2e-96	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	3e-65	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3B0A0	4e-95	A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QFI3	4e-95	A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBL	A0A3P6AN88	4e-95	A0A3P6AN88_BRAOL; Uncharacterized protein
STRING	Bo3g004850.1	7e-96	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-42	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]