PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134554001
Common NameGSBRNA2T00134554001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 1149aa    MW: 126344 Da    PI: 7.8884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134554001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-081156346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          W+ e+d  + +a + +  +    W++Ia+ ++ g++ +q+k+++  
  GSBRNA2T00134554001 11 VWSREDDIAFERALASYTDEseeKWEKIAADVP-GKSVEQIKEHYEV 56
                         6*****************99*************.**********965 PP
2Myb_DNA-binding39.61.3e-12119163347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00134554001 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.213762IPR017884SANT domain
SMARTSM007176.9E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-41057IPR009057Homeodomain-like
PfamPF002493.9E-71155IPR001005SANT/Myb domain
CDDcd001678.46E-81258No hitNo description
SuperFamilySSF466892.77E-91265IPR009057Homeodomain-like
PROSITE profilePS5129417.173112168IPR017930Myb domain
SuperFamilySSF466898.22E-16114169IPR009057Homeodomain-like
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-16116166IPR006447Myb domain, plants
CDDcd001678.57E-9119164No hitNo description
PfamPF002491.6E-10119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-10119162IPR009057Homeodomain-like
PROSITE profilePS513756.445353387IPR002885Pentatricopeptide repeat
PfamPF015350.071359381IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-5363385IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579419454IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.963455486IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-5486623IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.084487521IPR002885Pentatricopeptide repeat
PfamPF015350.04489517IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.763561591IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.041592626IPR002885Pentatricopeptide repeat
PfamPF015357.3E-5594623IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-6594628IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.204664694IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.177695729IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-5766860IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.355768798IPR002885Pentatricopeptide repeat
PfamPF015350.068773795IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.69800830IPR002885Pentatricopeptide repeat
PfamPF015359.1E-4802827IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.83831865IPR002885Pentatricopeptide repeat
PfamPF015350.0062834862IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-5834867IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.042900930IPR002885Pentatricopeptide repeat
PfamPF130413.7E-7930979IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.268931965IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-6933966IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.4329661001IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.04810021032IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.24510681102IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0080156Biological Processmitochondrial mRNA modification
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1149 aa     Download sequence    Send to blast
MTVEEVSDGS VWSREDDIAF ERALASYTDE SEEKWEKIAA DVPGKSVEQI KEHYEVLVED  60
VGRIESGCVP LPDYGSPEGS SGHGGDDGGS GKKGGNSHAG ESNQGSKAKS EQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGDADV STPQGPITGQ NNNNGSTAVT GGGNKSAKQA ASQPPPLPSM YGTPTIGQPV  240
IGPLVSAVGT PVNLPPPPPP HLAFGVHTAP VPGAPVNMGQ MPYTMPRTPT AHRIFWGKME  300
VLRQFIQSFR FLSGFGVDNR VLSDVVKACA SVSELRSGRA LHGCVAKLGH LGCNEVSKSV  360
LNMYAKCRRM DDCQKMFRQM TSVDPVVWNI VLTGLSHSCA HETMRFFKGM LFEDEPRPSS  420
VTFAIVLPVC VRLGKAAYNG KVLHSYIIKI GLEKDTLVGN ALVSMYAKSG FVLPDAYAAF  480
DSIADKDVVS WNAFIAGFSE NNMKVNALRL FSTMLKEPVE PNYATIANIL PVCASMDKSI  540
AYGSGRQIHG YVVQRSWLQS HVNVCNSLVS FYLRVRRIGE AASLFTTMGS RDLVSWNVVI  600
AGYASNCEWS KALQLFRKLV HKGDVSPDSV TIVSILPVCA QLTNLTIGKE IHSYVLRRAY  660
LMGDTSVGNA LISFYARFGD TCAAYWVFSL ISKKDIISWN AILDAYADSP RHSQFMNLLH  720
HLFDEAIIPD SVTILSIVKF CTNVLGVGKV KEVHGYSVKA GLLNDEDEPM LGNALLDAYA  780
KCGNVEYAQR IFQGLSKKRT LVTYNSMLSG YVNSGSQDDA QLLFREMSTT DLTTWSLMVR  840
IYAESCCPSE AIDVFREIQA RGMRPNTVTI MNLLPVCAQT ASLHLVRQCH GYIIRGGLGD  900
IRLKGTLLDV YAKCGSLKNS YSVFQLEAHK DLVMFTSMIA GYAVHGMGKE ALLIYSRMMD  960
LGIKPDHVFI TTLLTACCHA GLIQDGLQIF DSIRTVYGLK PTMEQYASVV DLLARGGRLD  1020
DAYSFVTEMP VEPNENIWGT LLRACITYNR MDLGRLASNH LLQAESEDIG NYVLISNMYA  1080
ADGKWEGVKE LRKLMKKKEM KKPAGCSWLD VDGKMNVFMS GDSSHPRRNS MFDVLNALFV  1140
QMKEPVAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-5431410992338PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134554001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895540.0AC189554.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680343.10.0putative pentatricopeptide repeat-containing protein At5g08490
SwissprotQ9FNN90.0PP370_ARATH; Putative pentatricopeptide repeat-containing protein At5g08490
TrEMBLA0A3P5ZXE30.0A0A3P5ZXE3_BRAOL; Uncharacterized protein
STRINGBo3g004960.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-146MYB family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  3. Yuan H,Liu D
    Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis.
    Plant J., 2012. 70(3): p. 432-44
    [PMID:22248025]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Liu JM, et al.
    The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1825
    [PMID:27994613]