PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134618001
Common NameGSBRNA2T00134618001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 193aa    MW: 22165.4 Da    PI: 9.0581
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134618001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3156.53.2e-48241381115
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          ++lk+rmwkd++l+++lk++k+q+    ++ ++    +++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sds
  GSBRNA2T00134618001  24 DDLKRRMWKDRNLMEKLKQQKRQSN---DV-VSL--ASHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDS 107
                          79********************964...44.333..4589************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXX......XXX CS
                 EIN3  91 LraWWkekvefdrngpaaisky......qak 115
                          Lr+WWke v+fd+++p+a+s+y      +a+
  GSBRNA2T00134618001 108 LRRWWKETVQFDQTAPNAVSDYitlavaAAA 138
                          **********************765544344 PP
2EIN338.42.7e-12144182219257
                          GGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                 EIN3 219 ptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                          + + ++r+l+rqsk+lqdkm+ake++++++vlnqee+++
  GSBRNA2T00134618001 144 EPSRRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL 182
                          56789*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.8E-4724133No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-1260183IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-971182IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048738.9E-8147179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVGVEELEPL SPAEEEGEED ISYDDLKRRM WKDRNLMEKL KQQKRQSNDV VSLASHRAEA  60
SRRKKMARSQ DSVLKYMMKI MEVCKAKGFV YGIVPEKGKP ITGSSDSLRR WWKETVQFDQ  120
TAPNAVSDYI TLAVAAAAEL IEKEPSRRVR RLARQSKCLQ DKMMAKETDT WSRVLNQEEA  180
LLNIKDLKIS ED*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134618001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013738687.17e-89putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-74EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLM4CPB21e-116M4CPB2_BRARP; Uncharacterized protein
STRINGBra006050.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.12e-68EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]