PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134672001
Common NameGSBRNA2T00134672001, LOC106408491
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22500.7 Da    PI: 9.5318
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134672001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.4e-161362150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k++e++  r +tfskR++gilKK +E+   Cd+e++ ++fs++g  ++++
  GSBRNA2T00134672001 13 KKVESYEARRTTFSKRKAGILKKMNEIIAVCDVEASFLVFSESGYPRTFA 62
                         5789****************************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.759565IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-18564IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-20679IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-12727IPR002100Transcription factor, MADS-box
PfamPF003196.1E-151461IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-122742IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-124263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKRTKGKQKI EMKKVESYEA RRTTFSKRKA GILKKMNEII AVCDVEASFL VFSESGYPRT  60
FAHPSMEDAV DRVKCSLGHE PSGKDDASIG SLVEAYKRQK NEELKKKLCD LAEELKMVKE  120
KEKKMVEKKK IKESKNEWSN ILNEGVNKDE LKRVHQAFVE LNYSLSGKAL QRLGKDGDGS  180
SSALAERGHC DGGEAGAGEQ T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134672001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013704711.11e-145agamous-like MADS-box protein AGL23
TrEMBLA0A3P6DMJ51e-144A0A3P6DMJ5_BRAOL; Uncharacterized protein
STRINGBra037759.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-45AGAMOUS-like 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]