PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134978001
Common NameGSBRNA2T00134978001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 346aa    MW: 38143.2 Da    PI: 6.5847
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134978001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18257291135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  GSBRNA2T00134978001 257 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 291
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-9916345IPR016679Transcription factor, GATA, plant
SMARTSM004018.9E-17251305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-14253314No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15255289IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.26E-14256304No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16257291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSGDQRGQGP TGKTEMERVE AALKSSVRKD MAFKTTLPVY EDFLAVTTAE DFSVDDFFDL  60
SKDDVFTEEE AEPKTHQEML HVSSEEPQDK GDALRRSNDG FGSLPPSELS VPTDELAELE  120
WLSHFVEDSF TEYSAPNLTG TPTEKPAWLA GDRKHPVTPV THDSCFKSPV PSKSRTKRNR  180
NGTNFWSLGS SSSSGPSSSN STSSSSSDPS NTWFSGAELL EPVFTSEKPP VHKKHKKRSA  240
ESVCSGQLLL QQPSRRCSHC GVQKTPQWRA GPMGAKTLCN ACGVRYKSGR LLPEYRPACS  300
PTFSSELHSN HHRKVMEMRR KKEPTDDNET GLNQLVQSPQ AVPSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134978001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607034.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013607035.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013607036.10.0PREDICTED: GATA transcription factor 5
RefseqXP_013688521.10.0GATA transcription factor 5-like
RefseqXP_013688522.10.0GATA transcription factor 5-like
RefseqXP_022564778.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-171GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3P6E3590.0A0A3P6E359_BRAOL; Uncharacterized protein
STRINGBo9g022010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-166GATA transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]