PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135091001
Common NameGSBRNA2T00135091001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 158aa    MW: 18291.9 Da    PI: 6.3899
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135091001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1125.32.7e-398015642118
                 CG-1  42 ynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                           + +++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah e+n++fqrrcyw Le+el ++v+v+ylevk
  GSBRNA2T00135091001  80 HSFQVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHEEDNENFQRRCYWTLEQELMHVVFVQYLEVK 156
                          55689*********************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143748.79539157IPR005559CG-1 DNA-binding domain
SMARTSM010762.9E-3745156IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-3282155IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MATVTLALPH ESETESVMFF MCLFPLIQTP TTNSSMSLLD LKGGLIRCAQ NSKLSDSSLL  60
IRFNDSTDFD ELTEPVSPLH SFQVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH  120
CYYAHEEDNE NFQRRCYWTL EQELMHVVFV QYLEVKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135091001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938118e-73AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294038e-73AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108748e-73BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616703.13e-52PREDICTED: uncharacterized protein LOC106323081 isoform X2
TrEMBLA0A3P6DLM73e-94A0A3P6DLM7_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g057520.13e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1928046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.25e-46Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]