PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00135296001

Common Name

GSBRNA2T00135296001, LOC106428535

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 476aa MW: 51693.2 Da PI: 6.3308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00135296001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	300	348	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GSBRNA2T00135296001 300 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 348 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-17	295	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.50E-11	295	352	No hit	No description
PROSITE profile	PS50888	15.478	297	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-17	298	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	300	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MDVNEKEEFS GEKRNTSYDS ADNHPSDWRI PGSNPVSAPF GSYSTENLIT ASCSPSQMMD 60 SFGQTLWYDP TNLQAVGYGG FSGGHPSSSS SSCFRGNMDR SLEMGWSMPN LLPPKGNGLF 120 LPNASSFLPP SMAQLPADSG FVERAARFSL FSDMVNQPLA KPESVGLFLE GQCPSTEVNV 180 GVAHNDASTA MKGPNVRSSE QASKPNVSED TQSSGQKGGE TSSKGFDSKK RKRNRQNSEA 240 DQSHKSEEEA ENNGDKKRND EQSPNSPGNK TNSGKQQGKQ TSDPKDGYIH VRARRGQATN 300 SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT 360 VNPQMDFNLE ALLAKDVREL QLRGGSSSAT PFPQNMPMVY PPLPHGFMQQ TLSSIGRNIS 420 SPLSPINGGY KRQETNGWEG DLQNVIHINY GAGDVPSDPE AATASLPSSN MKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MDVNEKEEFS GEKRNTSYDS ADNHPSDWRI PGSNPVSAPF GSYSTENLIT ASCSPSQMMD  60
SFGQTLWYDP TNLQAVGYGG FSGGHPSSSS SSCFRGNMDR SLEMGWSMPN LLPPKGNGLF  120
LPNASSFLPP SMAQLPADSG FVERAARFSL FSDMVNQPLA KPESVGLFLE GQCPSTEVNV  180
GVAHNDASTA MKGPNVRSSE QASKPNVSED TQSSGQKGGE TSSKGFDSKK RKRNRQNSEA  240
DQSHKSEEEA ENNGDKKRND EQSPNSPGNK TNSGKQQGKQ TSDPKDGYIH VRARRGQATN  300
SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  360
VNPQMDFNLE ALLAKDVREL QLRGGSSSAT PFPQNMPMVY PPLPHGFMQQ TLSSIGRNIS  420
SPLSPINGGY KRQETNGWEG DLQNVIHINY GAGDVPSDPE AATASLPSSN MKVEP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00135296001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013724743.1	0.0	transcription factor bHLH49 isoform X1
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0D3AP45	0.0	A0A0D3AP45_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DP75	0.0	A0A3P6DP75_BRAOL; Uncharacterized protein
STRING	Bo2g062450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106428535

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]