PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135308001
Common NameGSBRNA2T00135308001, LOC106428531
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 307aa    MW: 33671.1 Da    PI: 6.0107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135308001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-144493255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L +++ Y+++Lq
  GSBRNA2T00135308001 44 RSKHSVTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIGYVQYLQ 93
                         889*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1840113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7454292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-2142115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-114493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-134497No hitNo description
SMARTSM003531.1E-104898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGGEEDLG SKREGSSSAS RADAKDNDKA SAVRSKHSVT EQRRRSKINE  60
RFQVLRELIP NSEQKRDTAS FLLEVIGYVQ YLQEKVQKYE GSYPGWSQEP TKLTPWRNNH  120
WRVQSLASHP VAVNNGSAPV IPFPGKFEDI TVASAHATVS EVQNPVECDK GRAIASKSID  180
SQPELDDKGL PPLQPIHPLA HSEQVNNECP ATSDGQGPSD DLVIESGTIS ISTVYSHELL  240
SSLTQSLQNA GIDLSHAKLS VQIDLGKRAN PSNKNLLTSD IEGATRSRNP SVEEDSEHSH  300
KRMRTL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.52670.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135308001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724740.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA41e-162BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A3P6ARQ60.0A0A3P6ARQ6_BRACM; Uncharacterized protein
STRINGBo2g062560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-155BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]