PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135630001
Common NameGSBRNA2T00135630001, NAC84.1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 203aa    MW: 23004.1 Da    PI: 9.2053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135630001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.81.1e-3281311128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp G+rFhPtd+el+ +yL +k  +++l+  ++i+ +d++ ++P ++p   ++eek+ yfF+k++++ +  +r++ + ++gyWk  gk++
  GSBRNA2T00135630001   8 LPIGYRFHPTDQELILHYLLPKSFASPLPS-SIIPVFDVFFSHPLTFPG--DQEEKKRYFFCKKRREVS--SRTKISSNDGYWKPIGKER 92 
                          699*************************99.88***************3..4578899******99875..68888999*********** PP

                  NAM  91 evlskkgelvglkktLvfykgrap..kgektdWvmheyrl 128
                          e+++  g++vg+++tL+f++ +++  k +kt+W+m ey l
  GSBRNA2T00135630001  93 EIIA-CGRTVGIRRTLAFHETNKSscKLNKTRWCMTEYCL 131
                          ****.999***********7655511556*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-385150IPR003441NAC domain
PROSITE profilePS5100537.4038151IPR003441NAC domain
PfamPF023652.4E-209131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVNGGVKLPI GYRFHPTDQE LILHYLLPKS FASPLPSSII PVFDVFFSHP LTFPGDQEEK  60
KRYFFCKKRR EVSSRTKISS NDGYWKPIGK EREIIACGRT VGIRRTLAFH ETNKSSCKLN  120
KTRWCMTEYC LAGFASTKVS GEWAVYNVYE RKASKGRRQR KSRGRDDEED LNCIDFTIES  180
DHETGPPPPS SPTSSDESGS II*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-18613113140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.177910.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135630001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121709.11e-149PREDICTED: NAC domain-containing protein 83
TrEMBLA0A078C0E41e-148A0A078C0E4_BRANA; NAC transcription factor 84
TrEMBLA0A397XVB61e-148A0A397XVB6_BRACM; Uncharacterized protein
STRINGBra008788.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-98NAC domain containing protein 84
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]