PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136053001

Common Name

GSBRNA2T00136053001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 166aa MW: 18428.7 Da PI: 4.2836

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136053001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79	6.4e-25	11	99	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ + +++r GSBRNA2T00136053001 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHR 99 6899***************************************************************************9976554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-40	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	7.83E-36	12	141	IPR009072	Histone-fold
Pfam	PF00808	7.6E-22	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHRY ETMQDSQRSV KMNSGAEMTE 120 EEAAAEQQRM FAEARARMNG GGGVSVPQPD PEQQVDTQQQ SNLQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	9e-35	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.1961	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136053001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122430.1	1e-109	PREDICTED: protein Dr1 homolog
Refseq	XP_013715273.1	1e-109	protein Dr1 homolog
Refseq	XP_022549450.1	1e-109	protein Dr1 homolog
Swissprot	P49592	1e-100	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A397XN50	1e-108	A0A397XN50_BRACM; Uncharacterized protein
TrEMBL	M4CYN1	1e-108	M4CYN1_BRARP; Uncharacterized protein
STRING	Bra009328.1-P	1e-109	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.1	3e-73	nuclear factor Y, subunit B12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]