PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136062001
Common NameGSBRNA2T00136062001, LOC106419432
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 544aa    MW: 59418.1 Da    PI: 8.4546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136062001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.59.9e-18283332255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  GSBRNA2T00136062001 283 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 332
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-23280352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-19282351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-15283334No hitNo description
PfamPF000103.3E-15283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPKPTPPPS SQGSHLKTHD FLQPLECVGA  60
KEETSRIDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM  120
MFTAAAQTGG GNERIVVDEN SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS  180
IRADGAATMG QCPVVERRSQ SLTNTPLSGF SSRSSSQGSG LKSQSFMDML RSAKGTSQDD  240
DLDDEEDFVM KKESSSTSQI HRDLRVKAEA RGGGNDQKLN TPRSKHSATE QRRRSKINDR  300
FQMLRQLIPN SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNHEPA KLLNWQRNNQ  360
QLVPEGTVAF APKLEEEKNN IPVPVLGTTQ GVVIDRPETL NRATPATGAF PLSAQSNSFI  420
SPVIAGNPVN QLHTRVAASE TLEPSQSSRG HTQPLKEEGG DEEVHAGNIS ISSVYSQGLV  480
KTLREALENS GVDLTKASIS VEIELAKQSS SFKDHEPRGL VSTGNDDPKQ TRQPKRLKTN  540
NTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142860.0leaf| seed| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136062001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715668.10.0transcription factor BIM1 isoform X1
RefseqXP_022549448.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CYM50.0M4CYM5_BRARP; Uncharacterized protein
STRINGBra009322.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]