PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136125001

Common Name

GSBRNA2T00136125001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 254aa MW: 28387.7 Da PI: 6.3989

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136125001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.6e-20	83	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g GSBRNA2T00136125001 83 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 132 7******.******93....36**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.8E-33	82	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.25E-22	83	141	IPR016177	DNA-binding domain
SMART	SM00380	4.7E-37	83	146	IPR001471	AP2/ERF domain
Pfam	PF00847	6.0E-14	83	132	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.948	83	140	IPR001471	AP2/ERF domain
CDD	cd00018	2.41E-20	83	141	No hit	No description
PRINTS	PR00367	1.6E-11	84	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-11	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMPFGAGESD ERKEADDEEN IFPFLSARSQ YDTRAMVSAL TQVIGNQSST HDSNQYHPVE 60 YNQQDPIQHV PPTQDQGNLR KRHYRGVRQR PWGKWAAEIR DPQKAARVWL GTFETAEAAA 120 LAYDEAALKF KGSKAKLNFP ERAQLASTTS TITGLPNYHS SNNQMYYSNP QTNPQTVPYY 180 NQYYYNQYLQ QGGNSNDALS YSLAGGETGG SMYNHQSISN TTSSSSGGSS RQQQEQDYAR 240 FWHFGDSSPS SGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-26	82	142	1	62	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269\|PubMed:24158907}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269\|PubMed:24158907}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136125001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269\|PubMed:24158907}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189195	0.0	AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122352.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF115
Refseq	XP_013715453.1	0.0	ethylene-responsive transcription factor ERF115-like
Swissprot	Q9LY29	1e-130	EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBL	A0A397XWQ8	0.0	A0A397XWQ8_BRACM; Uncharacterized protein
STRING	Bra009272.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5292	18	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07310.1	1e-116	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang Y, et al. Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development. Nucleic Acids Res., 2016. 44(3): p. 1271-84 [PMID:26721386] Zhang Y, et al. TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance. Plant Physiol., 2016. 171(1): p. 483-93 [PMID:26969721] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]