PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136207001
Common NameGSBRNA2T00136207001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23124.3 Da    PI: 4.8619
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136207001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-111160351
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51
                         ie+  +r++   kR +g++K AeEL +L d+++++  f   +gkl  ++s
  GSBRNA2T00136207001 11 IEDRKKRNIACQKRMKGLMKMAEELTILSDTKACLTFFNRdDGKLVAWPS 60
                         99**********************************99852699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.227149IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-10160IPR002100Transcription factor, MADS-box
CDDcd002665.23E-23281No hitNo description
SuperFamilySSF554559.42E-18293IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-5323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-131158IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTRPKLKIAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DDGKLVAWPS  60
QEEAESLIDR FYALPEIQRN MYADDQESYI KTITKKIEKK LEHSRKVVEE LEMDHLMLQI  120
QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI PKATDVAPEG  180
DDEEYMKANE GESSKSGGAD NA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215RPKLKIAWIEDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136207001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122909.11e-148PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A3P6D1A51e-147A0A3P6D1A5_BRACM; Uncharacterized protein
TrEMBLM4CYA21e-147M4CYA2_BRARP; Uncharacterized protein
STRINGBra009199.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-44AGAMOUS-like 96
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]