PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136255001
Common NameGSBRNA2T00136255001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 251aa    MW: 28928 Da    PI: 9.725
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.5e-1432113286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt++ + +L++a   +  rl+ g+l++++W+ev+ ++   +  g  ++ +qCk++++ l+k+yk++k+  +       s +++fd+l+
  GSBRNA2T00136255001  32 WTEDATATLLQAWGHRFVRLNFGNLRQNDWKEVAGAVnssHCSGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 113
                          *************************************7666777789999*****************99986......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-2430114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METTTTPPPP AKPQQPHSIV SHRQPSGRED WWTEDATATL LQAWGHRFVR LNFGNLRQND  60
WKEVAGAVNS SHCSGRPKTD TQCKSRIDTL KKKYKAEKAK LSPSAWRFFD RLDVLIGPVS  120
KKPAEEVVKS EALKPYLSLT GNKHRESSRE DDEDEAGDWG LVSRKYPRVE EGDLSEESAC  180
KELARTIVKL GEVYERVEGR KQKMMIELEK QRMEVVKELE LKRINMLMEM QLELEKSKNR  240
KRERVVQVRT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136255001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715699.11e-150trihelix transcription factor ASIL2-like
TrEMBLA0A397XYC91e-154A0A397XYC9_BRACM; Uncharacterized protein
STRINGBra009119.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.21e-99sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]