PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136462001
Common NameGSBRNA2T00136462001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 956aa    MW: 106104 Da    PI: 4.4632
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136462001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.67.9e-27107189271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  GSBRNA2T00136462001 107 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 189
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-45102195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-35106189IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-24109189IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.31E-20109190IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.92E-39194297IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-41196314No hitNo description
SMARTSM011386.3E-63196345IPR014889Transcription factor DP, C-terminal
PfamPF087816.4E-41197314IPR014889Transcription factor DP, C-terminal
SuperFamilySSF812965.13E-16869954IPR014756Immunoglobulin E-set
CDDcd028596.05E-21871954No hitNo description
PfamPF165611.5E-16872954IPR032640AMP-activated protein kinase, glycogen-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MTTTIGSNSN HNNRSDDGSV TNNNNNPSNR SWGTVVSAQS VSTSESMGSP SSKSEQTTTV  60
ATTSATDSAF IQLNNLDIQG DDAASQGPAS GVKKKKRGQR ATGPDKTGRG LRQFSMKVCE  120
KVESKGRTTY NEVADELVAE FALPNNDGTP PDQQQYDEKN IRRRVYDALN VLMAMDIISK  180
DKKEIQWRGL PRTSLSDIEE LKAERLSLRN RIEKKTAYAQ ELEEQYVGLQ NLIRRNEHLY  240
SSGNAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NFVLKTMKFC  300
EQPPFNNAHN NNSQQTNILM LENNTEGIST DPVPPPQPAD MYQSHPQLHA QPRVIPTPVN  360
NNDAAQVASP PVSPVIDAGN FGVRQNMATL SFISLASFHN RRNPMFYHHL HQQQRQLLFV  420
TRLQKKNNSF VCFACSIKQT RVRKRVKSNE ELRSEILEFV ASAGLPPGHV PSMKELTARE  480
RVDLANVVRR RGYKFIRELL ASSEDCNELT SPSGVSLEDS LTEGQDEEAL ESTEPPSSSE  540
MYSTETDASV SLDQRADSFP EEVDVGKSSP EAEECGSVSQ EESSLAAVSS MESSISDLGD  600
SNHSAGITES NLQIESVELS NVADTESSSS EASTSEDDTL SSSEREADNV LVTEEDEEVN  660
DVDEDSSLAY DHYTSQDLNH TEHVVESVAT ESLSGDKDWM LGLSSSTSSI EEKTTRFLQN  720
GYLDTVEDVS DNESSPEETT KGGEYSHGGQ RSVSVAPNGS ALAYEEVTYA TEANNSQRNR  780
DQRYGNAELD KDSHDETMKR ENQVEITRLR FMLRQKELEL SRLKEQIEKE KLSLSVLQRK  840
AETEIQKAQM LVLQKDVELQ EAEESLSGLQ EVEIEYCGDG NVVEVTGSFN GWEHRVGLEL  900
EASKSTGKQK CWSTLLWLYP GTYEIKFIVD GQWITDPQRD SVTRGHITNN ILKVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35100194193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.150221e-131leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtInvolved in starch granule initiation in leaf chloroplasts. {ECO:0000269|PubMed:28684429}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136462001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122700.10.0PREDICTED: uncharacterized protein LOC103847382 isoform X1
SwissprotF4KFB30.0PTST3_ARATH; Protein PTST homolog 3, chloroplastic
TrEMBLM4CZ830.0M4CZ83_BRARP; Uncharacterized protein
STRINGBra009530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1044334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-167Transcription factor DP
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Seung D, et al.
    Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.
    Plant Cell, 2017. 29(7): p. 1657-1677
    [PMID:28684429]