PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136932001

Common Name

GSBRNA2T00136932001, LOC106368934

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 368aa MW: 41044.3 Da PI: 8.5507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136932001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00076	226	263	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L +l+ + +K + a++L +A+ YI+ L GSBRNA2T00136932001 226 RKEKLGGRIAALHQLVSPY-----GKTDTASVLSEAIGYIRFL 263 5566667889999999888.....9****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.528	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-7	223	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-10	224	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.27E-4	224	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MTNRRVLERS PVRNLTAARN QNWWNKVSGG LMPPPPPQLP PCTASYHLLP SLLPSYFPSP 60 TSSSSSLPPF RNPNLCSWLH NNDDLPLDQP WSHSKLLLGG LMMGDEERME MMNHYHHQNQ 120 QHSYQEKKLE NWEEQILSHE ASIKQEISNN NGYMIISSPK SPLNKSCVTT TTIHNFNEDS 180 NNSNINGLNF SECNSSEISG SCFANKKPKL QVPSLRPSSQ SILKVRKEKL GGRIAALHQL 240 VSPYGKTDTA SVLSEAIGYI RFLHSQVEVL SVPYFGTPSR NNMMHQHARG DMNGLFPQDP 300 GQLVSEYCMK RSNGVSSSST NKPNLNEETK KDLKSRGLCL VPISCTLQVG SYNGTDYWAP 360 AFGISFQ*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MTNRRVLERS PVRNLTAARN QNWWNKVSGG LMPPPPPQLP PCTASYHLLP SLLPSYFPSP  60
TSSSSSLPPF RNPNLCSWLH NNDDLPLDQP WSHSKLLLGG LMMGDEERME MMNHYHHQNQ  120
QHSYQEKKLE NWEEQILSHE ASIKQEISNN NGYMIISSPK SPLNKSCVTT TTIHNFNEDS  180
NNSNINGLNF SECNSSEISG SCFANKKPKL QVPSLRPSSQ SILKVRKEKL GGRIAALHQL  240
VSPYGKTDTA SVLSEAIGYI RFLHSQVEVL SVPYFGTPSR NNMMHQHARG DMNGLFPQDP  300
GQLVSEYCMK RSNGVSSSST NKPNLNEETK KDLKSRGLCL VPISCTLQVG SYNGTDYWAP  360
AFGISFQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136932001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013664467.1	0.0	transcription factor bHLH133 isoform X1
Swissprot	Q7XHI5	1e-137	BH133_ARATH; Transcription factor bHLH133
TrEMBL	A0A3P6G0X8	0.0	A0A3P6G0X8_BRAOL; Uncharacterized protein
STRING	Bra031111.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-91	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106368934

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kumar V, et al. KIX domain of AtMed15a, a Mediator subunit of Arabidopsis, is required for its interaction with different proteins. Plant Signal Behav, 2018. 13(2): p. e1428514 [PMID:29341856]