PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136942001

Common Name

GSBRNA2T00136942001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 1022aa MW: 111694 Da PI: 9.2177

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136942001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.7e-27	149	202	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ GSBRNA2T00136942001 149 KKVDWTPELHRRFVDAVEQL-GLEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 202 5899**************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.728	145	204	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-26	146	205	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-17	149	205	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-25	149	202	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-7	151	200	IPR001005	SANT/Myb domain
Pfam	PF14111	6.1E-31	651	793	IPR025558	Domain of unknown function DUF4283

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence Send to blast
MLALSPARNS ARGGCFDGES EFLATSSDFT INPEENFPVF TDQGDLLDII DFDDLFGVAG 60 DVLPDLEIDP EILAGDFSAS SSSEKTDSQG ETNKKGISEE VVSKRDEDET AMSEKMANYV 120 DGDSNRKRKY SSSSGSSKNN SNEGKRKVKK VDWTPELHRR FVDAVEQLGL EKAVPSRILE 180 LMGVHCLTRH NVASHLQKYR SHRKHVLARE AEAANWTRKR HIYGLDSTGV NINGRNKNGW 240 IAPAPTIGYA PPPPAAVASP TIHHHHFRPL HVWGHPTVNQ SVIPHVFPKH LPPPSTAMAT 300 TPFWVSDNPY WPRVHNGTAP YFPTVATRFR APPVAGIPQA MPPHHTVYKP DHGYGGSRSL 360 VDLHPSKESV DAAIGDVLTR PWLPLPLGLK PPAFDGVMTE LHRHGVSEST INPRGRKHLQ 420 RIFLSLPKAK LRSLSFALIR RRCRRRSPPP PYMAKKKKPK PVSSGASPVA SIDSSVPSAS 480 SSATVPVSPD PAAASSPALE EGEISPFSAS FHHLATAENF QDQNSSPIAD LQEKGLEVLE 540 NPNAQTAATE PTVPVNPITE AAATESHVPV STHPEKPLQS DKLQSPPVAP IASNQASESS 600 QLQAQPTTVF KDQAKQWVDK VKTKARKLDP EGTPFTLESG EACVKIPNSV IEKNRKSWDS 660 FIIGQFYEEA PARAKIHAIV NGMWSKHRRD IAVSKMNGNA FLFRVPCPNA RRCILSQCLW 720 QVDGQTLFVA KWSPGLKPEK PSLATVPVWL DFTGVPLQFF NEDALKEIAV LVGHPLCLHP 780 TTSNLTNIEV ARVYTVIDLR KPLPEAVNAQ FETGEITRTT VSSPWLPSLC SHCKKVGHTI 840 SRFSLAPPTC ATCRSVKHNT DACPRNSNHH RQGKEPIASQ YPIVPNPAAS RYKNNPGPRA 900 TGPAPSSHSK KGNSIWIRAD PSALEDNGKR QASRSIPLLP AGVPRHDEGL KDFCVDLRSN 960 LFTSGSKAPS TASSTSQSDS EDLSYDDDNP DIEGDKYIEV ISKRKKKLSR ALARARGPLN 1020 L*

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence Send to blast

MLALSPARNS ARGGCFDGES EFLATSSDFT INPEENFPVF TDQGDLLDII DFDDLFGVAG  60
DVLPDLEIDP EILAGDFSAS SSSEKTDSQG ETNKKGISEE VVSKRDEDET AMSEKMANYV  120
DGDSNRKRKY SSSSGSSKNN SNEGKRKVKK VDWTPELHRR FVDAVEQLGL EKAVPSRILE  180
LMGVHCLTRH NVASHLQKYR SHRKHVLARE AEAANWTRKR HIYGLDSTGV NINGRNKNGW  240
IAPAPTIGYA PPPPAAVASP TIHHHHFRPL HVWGHPTVNQ SVIPHVFPKH LPPPSTAMAT  300
TPFWVSDNPY WPRVHNGTAP YFPTVATRFR APPVAGIPQA MPPHHTVYKP DHGYGGSRSL  360
VDLHPSKESV DAAIGDVLTR PWLPLPLGLK PPAFDGVMTE LHRHGVSEST INPRGRKHLQ  420
RIFLSLPKAK LRSLSFALIR RRCRRRSPPP PYMAKKKKPK PVSSGASPVA SIDSSVPSAS  480
SSATVPVSPD PAAASSPALE EGEISPFSAS FHHLATAENF QDQNSSPIAD LQEKGLEVLE  540
NPNAQTAATE PTVPVNPITE AAATESHVPV STHPEKPLQS DKLQSPPVAP IASNQASESS  600
QLQAQPTTVF KDQAKQWVDK VKTKARKLDP EGTPFTLESG EACVKIPNSV IEKNRKSWDS  660
FIIGQFYEEA PARAKIHAIV NGMWSKHRRD IAVSKMNGNA FLFRVPCPNA RRCILSQCLW  720
QVDGQTLFVA KWSPGLKPEK PSLATVPVWL DFTGVPLQFF NEDALKEIAV LVGHPLCLHP  780
TTSNLTNIEV ARVYTVIDLR KPLPEAVNAQ FETGEITRTT VSSPWLPSLC SHCKKVGHTI  840
SRFSLAPPTC ATCRSVKHNT DACPRNSNHH RQGKEPIASQ YPIVPNPAAS RYKNNPGPRA  900
TGPAPSSHSK KGNSIWIRAD PSALEDNGKR QASRSIPLLP AGVPRHDEGL KDFCVDLRSN  960
LFTSGSKAPS TASSTSQSDS EDLSYDDDNP DIEGDKYIEV ISKRKKKLSR ALARARGPLN  1020
L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-15	153	204	6	57	Transcription factor LUX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	439	457	RRRCRRRSPPPPYMAKKKK
2	443	457	RRRSPPPPYMAKKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8338	0.0	leaf\| seed\| vegetative meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136942001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352526	0.0	AK352526.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-C06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3DWC9	0.0	A0A0D3DWC9_BRAOL; Uncharacterized protein
STRING	Bo8g102300.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2209	27	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-162	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]