PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00137008001

Common Name

GSBRNA2T00137008001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 131aa MW: 15283.6 Da PI: 10.5973

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00137008001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	95.2	1.3e-29	6	65	5	64
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 + +C+dCGnqakk+C+++RCRtCCk+++f+C+th+kstWvpa++r+++qq +++++ +++ GSBRNA2T00137008001 6 GRRCEDCGNQAKKECVYMRCRTCCKTKSFHCQTHIKSTWVPAYRRSQKQQLQTQTQPHQK 65 569******************************************999887776655543 PP
2	DUF702	47.1	8.2e-15	71	115	92	136
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtav 136 + + + +++t+++P+e+ss a frcv+vss+ddg+e++aYqt+v GSBRNA2T00137008001 71 NPKRVRIHTSTRHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTV 115 4455667888999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.3E-38	6	115	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	9	50	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-16	83	115	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK TKSFHCQTHI KSTWVPAYRR SQKQQLQTQT 60 QPHQKGLATI NPKRVRIHTS TRHFPAELSS LADFRCVKVS SIDDGKEQYA YQTTVLERTR 120 FQRHSSRSRP *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00137008001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	1e-52	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	1e-52	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013657988.1	1e-68	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	3e-61	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A0D3DW76	1e-64	A0A0D3DW76_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GXU0	4e-65	A0A3P6GXU0_BRAOL; Uncharacterized protein
STRING	Bo8g101770.1	2e-65	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	4e-61	SHI-related sequence3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]