PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137355001
Common NameGSBRNA2T00137355001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 216aa    MW: 23512.4 Da    PI: 9.2884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137355001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-212171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++aa+++l+g
  GSBRNA2T00137355001 21 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 71
                         68********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-142171IPR001471AP2/ERF domain
CDDcd000182.80E-182181No hitNo description
Gene3DG3DSA:3.30.730.103.6E-322279IPR001471AP2/ERF domain
SMARTSM003804.9E-382285IPR001471AP2/ERF domain
PROSITE profilePS5103223.6442279IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-222280IPR016177DNA-binding domain
PRINTSPR003675.8E-112334IPR001471AP2/ERF domain
PRINTSPR003675.8E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRKGRGSSAV PPALPGSVKE PRYRGVRKRP WGRFAAEIRD PLKKSRVWLG TFDSAEEAAR  60
AYDAAARNLR GPKAKTNFQI DCSPSSPLQP LHHRNQIDPF MDHRLYGGEQ EIVIISRPAS  120
SSMSSTVKSC SGVRPASSSV AKAATKRYPR TPPVAPEDCR SDCDSSSSVV DDGDDIASSS  180
SRRKPPFEFD LNFPPLDGVD LFVGADDLHC TDLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2022781471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137355001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2479692e-99DQ247969.1 Brassica rapa subsp. pekinensis putative ethylene responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572256.11e-155ethylene-responsive transcription factor 7-like isoform X1
SwissprotQ9LDE47e-99ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A398A3851e-154A0A398A385_BRACM; Uncharacterized protein
STRINGBra001784.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-80ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]