PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137405001
Common NameGSBRNA2T00137405001, LOC106424362, LOC106439518
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 356aa    MW: 39494.3 Da    PI: 7.6077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137405001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-076893127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykt+ C  f   G C+ G+ C+FaHg+
  GSBRNA2T00137405001 68 YKTRMCVKFKS-GACRNGELCNFAHGM 93
                         89999**9999.*************95 PP
2zf-CCCH18.73.1e-061581721125
                          GTS.--TTTTT-SS-S CS
              zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                            G +C+yGdrC+F+H
  GSBRNA2T00137405001 158 F-GeECPYGDRCNFIH 172
                          5.449*********** PP
3zf-CCCH37.93.1e-12238263127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC  f + G+C++Gd+C+FaHg+
  GSBRNA2T00137405001 238 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 263
                          8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1465100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-86698IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4366794IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-46793IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-46893IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455147175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6147173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-8149173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8235266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14235266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713237264IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7237263IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDSSYSDSRP YGVWNQTQMV DSMSNDQSES QTMPQLKRPR LVDDNNTSWN VPSSNAPPVN  60
KGTANIFYKT RMCVKFKSGA CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDREKERER  120
ERERLSSVSG GNNSTNNGNW EDDQKIILRM KLCRKFCFGE ECPYGDRCNF IHEDLSKFRE  180
ENGKLRESLA ISVVDPLSVE NGVVAFSQQV EVNRQGGVSV PVPSPLNNGV GGVKTVFWKT  240
RLCGKFEKGQ CPFGDNCHFA HGQAELLQHS VGRVEGEAVN AVAASVSKPM VVPANEAFAM  300
KPAAQVTADS SGLNDEGRRK KCLLKWSDSK KINRIYGDWI DDLPVGQKST KPVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137405001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535211e-109AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736429.10.0zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT811e-173C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3P5ZN910.0A0A3P5ZN91_BRACM; Uncharacterized protein
STRINGBra001745.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-172C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]