PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138485001

Common Name

GSBRNA2T00138485001, LOC106411776, LOC106450680

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 240aa MW: 26699.9 Da PI: 6.403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138485001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00016	28	75	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 +r ++ rEr R+++N+ f eL + l + + Ka+iL +A++++k GSBRNA2T00138485001 28 KRINKAVRERLKREHLNELFIELADTLEMiQ-----QNSGKASILCEATKFLK 75 689999**********************966.....45567789999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.80E-4	25	76	No hit	No description
PROSITE profile	PS50888	11.122	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	27	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-11	28	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGSKTPSTSD DDPHASVDQR SRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLEMIQQN 60 SGKASILCEA TKFLKDVFGQ IESLRKEQTA LLSESNYLTT EKNELKEETS VLETEISRLH 120 SEIEARVNQS KPDLNTSPTP EYHHQQYPQL ASQFSGLPIF QGAGFQQSSA TPPGATVILL 180 PMHPDLQTQD TSDLTGHLQT QAPTVMYNSS NVSKPCPRYA NAADSWPSRL LGERLRVSE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16409	1e-98	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138485001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013708051.1	1e-178	transcription factor bHLH47-like isoform X2
Refseq	XP_013708053.1	1e-178	transcription factor bHLH47-like isoform X4
Refseq	XP_013747846.1	1e-178	transcription factor bHLH47-like isoform X2
Refseq	XP_013747848.1	1e-178	transcription factor bHLH47-like isoform X4
Refseq	XP_022574726.1	1e-178	transcription factor bHLH47-like isoform X4
Refseq	XP_022574785.1	1e-178	transcription factor bHLH47-like isoform X4
Swissprot	Q9SN74	1e-124	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A398ART2	1e-176	A0A398ART2_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZI33	1e-175	A0A3P5ZI33_BRACM; Uncharacterized protein
STRING	XP_006404356.1	1e-145	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-116	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106411776 \| 106450680

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]