PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138609001
Common NameGSBRNA2T00138609001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 229aa    MW: 25473.4 Da    PI: 10.5942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138609001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-12555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT +E+  l+ +v ++G+g W+tI +        k R+  ++k++w++
  GSBRNA2T00138609001  5 KQKWTSQEETALKAGVLKHGTGKWRTILSDPEftsilKSRSNVDLKDKWRN 55
                         79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.95161IPR017930Myb domain
SuperFamilySSF466894.91E-15259IPR009057Homeodomain-like
SMARTSM007172.5E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-13456IPR009057Homeodomain-like
PfamPF002491.7E-7555IPR001005SANT/Myb domain
CDDcd116608.34E-19656No hitNo description
SMARTSM005262.3E-6109182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150414.984119187IPR005818Linker histone H1/H5, domain H15
PfamPF005388.1E-6122180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.0E-8122191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.52E-9122192IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGAPKQKWTS QEETALKAGV LKHGTGKWRT ILSDPEFTSI LKSRSNVDLK DKWRNISVTA  60
MYGSRKKAKL ALKRTPSSHD DDNATALTIV AIANGVQHIS PLPPAVSCAP PPPRDFEGLF  120
SSVDKMILEA IANFKRHLGP DGKSILLYVE EKHNMQPDMK RLVTSRLKHL VNVGTIVKIK  180
HRYRICRNGA EQSSPQLYLE GNKESGVQQR LTRSQVVKPD NVKFESLQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138609001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618919.11e-162PREDICTED: telomere repeat-binding factor 3
RefseqXP_013699016.11e-162telomere repeat-binding factor 3-like
RefseqXP_013699017.11e-162telomere repeat-binding factor 3-like
SwissprotQ9M2X36e-99TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A0D3A9K21e-161A0A0D3A9K2_BRAOL; Uncharacterized protein
STRINGBo1g081300.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.14e-94telomere repeat binding factor 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]