PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138754001
Common NameGSBRNA2T00138754001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1975aa    MW: 223302 Da    PI: 8.1362
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138754001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.5e-19122212498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++ +   +++rl+lp +f +e+g++k++  ++ l  ++g +W  +l  + ++gr++ ++GWk+FvkangLk g++ +++l++ +++++v
  GSBRNA2T00138754001 122 FTLAPVDVRHCRLRLPMQFSRENGINKPG--KIYLLGKDGSKWLANL-LQESRGRMTVGDGWKSFVKANGLKIGESYTLELNW-EDTTPV 207
                          5556667899**************99776..8***************.78999999*************************99.888899 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          ++++ 
  GSBRNA2T00138754001 208 LSLCP 212
                          99986 PP
2B362.85.3e-20278368195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+l++grl+lp +f++e++++   + ++tl  ++g +W   l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++ ++ 
  GSBRNA2T00138754001 278 FLTLTITPDSLRHGRLRLPLEFMTENSMNR--PGDITLLGKDGAKWLASLL-LERRGRMCLGKGWKDFAKANGLKTGDSITLESIW-EDS 363
                          778899********************9885..558***************6.55556778***********************999.555 PP

                          ..EEE CS
                   B3  91 elvvk 95 
                          ++v++
  GSBRNA2T00138754001 364 TPVLR 368
                          56665 PP
3B364.22.1e-205866701098
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +++rl+lp +f++e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g+++++kl++ +++++v++++ 
  GSBRNA2T00138754001 586 DVRNCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LLESRGRMTLGDGWKSFVKANGLKTGESFTLKLNW-EDATPVLSLCP 670
                          5679**************99776..8***************.68888899*************************99.89999999986 PP
4B347.33.9e-15839924796
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++   + + l lp +f++++g+ +++  ++tl  +sg +W  +l    k+g++ l++GWk+F++ang+ +g+++v++l+ ++++  v+k+
  GSBRNA2T00138754001 839 TPEGVRDCKLQLPSQFMRTNGIMNPG--KITLLGRSGMKWFAYL--LSKDGTIALENGWKGFCEANGVMVGESFVLELIPTQDADHVFKF 924
                          566678899***********877544..8***************..9999***************************9976666666665 PP
5B355.88.1e-1811231212196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++ ++p+ + +++rl+lp++f++e+g++  ++ ++++  ++g +W ++l  +kk+  + ++kGWkeFvkangL++g ++ ++  + +
  GSBRNA2T00138754001 1123 FVTFTLPPEYATLCRLTLPNPFVKENGIS--KPAEIRVLGKDGTKWPITLLLDKKG-IMSFGKGWKEFVKANGLETGFTLKLM--W-E 1204
                           6778889999****************999..5669***************777776.5689****************999999..4.4 PP

                           EE..EEEE CS
                   B3   89 efelvvkv 96  
                           ++++ +++
  GSBRNA2T00138754001 1205 DTTPSFSL 1212
                           55555555 PP
6B366.44.1e-2113021394397
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3    3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90  
                            ++++ ++l s+ l+lp+ f++++g+   + ++++l d  grsW + l+++ +s+ ++++ GW++F++ ngL++g f++Fkl+g+ e+
  GSBRNA2T00138754001 1302 VAFVTDSSLDSDTLYLPRYFTSSNGLTR-KCRKIVLIDGGGRSWAMDLSFNESSDIFYISPGWRSFCDKNGLEAGGFFTFKLVGN-EE 1387
                           6788999999**************9986.557***************************************************95.55 PP

                           ..EEEEE CS
                   B3   91 elvvkvf 97  
                           ++v++++
  GSBRNA2T00138754001 1388 TPVLSFC 1394
                           5888777 PP
7B348.81.2e-1514591549197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++ ++p+++ +++ l+lpk f++e+g++k++  ++ l  ++g +W  +l  +kk+  + l+kGWk+Fvkang+++g +  +kl++ +
  GSBRNA2T00138754001 1459 FITFTLPPYYATLDKLTLPKLFVKENGINKPG--EIYLLGKDGTKWLTRLLLDKKG-LMRLGKGWKDFVKANGVESGFT--LKLIW-E 1540
                           778889*********************99766..8***************776665.568****************955..55557.6 PP

                           EE..EEEEE CS
                   B3   89 efelvvkvf 97  
                           ++++ ++++
  GSBRNA2T00138754001 1541 DTTPSFSLC 1549
                           666666665 PP
8B3438.4e-1416141708199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                           f++  +++ +l+ +r++lp +f+++  ++k++   + l  ++  +W  +l ++ ++gr+ l+kGW  F+k+n+ k+g++v+++ ++ +
  GSBRNA2T00138754001 1614 FLTLAITPTSLRCNRMRLPIPFLRKSCMDKPG--VIYLLGKEDTKWMANL-IQEGDGRMKLGKGWTAFAKENEFKAGESVTLESIW-E 1697
                           666778999999*************9666555..7***************.58888899************************999.8 PP

                           EE..EEEEE-S CS
                   B3   89 efelvvkvfrk 99  
                           +++++++++r+
  GSBRNA2T00138754001 1698 DETPMIRFLRT 1708
                           8889*999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-20117213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-21117214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-16118212No hitNo description
PROSITE profilePS5086314.762119214IPR003340B3 DNA binding domain
PfamPF023624.0E-19119212IPR003340B3 DNA binding domain
SMARTSM010191.8E-29119214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20268369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21274369IPR015300DNA-binding pseudobarrel domain
CDDcd100176.81E-18278370No hitNo description
PfamPF023622.2E-19278369IPR003340B3 DNA binding domain
PROSITE profilePS5086315.256278373IPR003340B3 DNA binding domain
SMARTSM010191.0E-29278373IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-22572677IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-22574676IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.819577672IPR003340B3 DNA binding domain
SMARTSM010192.4E-27577672IPR003340B3 DNA binding domain
CDDcd100171.79E-16581670No hitNo description
PfamPF023628.4E-20583670IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-7727796IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-8732796IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-5735796No hitNo description
SMARTSM010190.0012736824IPR003340B3 DNA binding domain
PROSITE profilePS508637.218736832IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-17825916IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-17827915IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-17833928IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915833928IPR003340B3 DNA binding domain
CDDcd100171.67E-12837925No hitNo description
PfamPF023627.1E-14838926IPR003340B3 DNA binding domain
PROSITE profilePS5086310.0529781070IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-129781068IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-119791069IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-109791065No hitNo description
SMARTSM010191.4E-99811070IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1611211206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1611211214No hitNo description
Gene3DG3DSA:2.40.330.102.6E-1511211207IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-1611231213IPR003340B3 DNA binding domain
SMARTSM010192.6E-2311231216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.71711231216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2012951395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2212971395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.29813001396IPR003340B3 DNA binding domain
CDDcd100177.90E-1913001395No hitNo description
PfamPF023623.9E-1913011394IPR003340B3 DNA binding domain
SMARTSM010193.8E-2713011397IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-1514541542IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1414571550No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1414581541IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-1414591549IPR003340B3 DNA binding domain
PROSITE profilePS5086312.92914591552IPR003340B3 DNA binding domain
SMARTSM010192.8E-2314591552IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-1416041715IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-1616101711IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1216141708IPR003340B3 DNA binding domain
SMARTSM010197.5E-1916141709IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5916141709IPR003340B3 DNA binding domain
CDDcd100173.19E-1216191707No hitNo description
Gene3DG3DSA:2.40.330.102.8E-717311806IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-617391802IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.05417411826IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1975 aa     Download sequence    Send to blast
MMFQVSDLGH RDVETPSSNN GQDNIGSMNK KHPYARQEAG FSSNHGDNQD INELPRKRNY  60
PETEKGSSSR HSCIVADATT ASSLHKYTPV FLTQDFTSLG GLKGKCSPKR IISSMGTRFV  120
TFTLAPVDVR HCRLRLPMQF SRENGINKPG KIYLLGKDGS KWLANLLQES RGRMTVGDGW  180
KSFVKANGLK IGESYTLELN WEDTTPVLSL CPTDHHSIGI RAEGECSEAS ENESLPIRPS  240
SGAEVIKYDS RKDESSSWER EKNHLRSRDS SSASQNRFLT LTITPDSLRH GRLRLPLEFM  300
TENSMNRPGD ITLLGKDGAK WLASLLLERR GRMCLGKGWK DFAKANGLKT GDSITLESIW  360
EDSTPVLRLL HIESTDDRRQ QGECSKAREK ESAFTEPSSG NKTRKLESNR EESRIYPLTR  420
LDSSLVNQNR FEISTLSPEI LRHGAHDYQI GEIVVFRDER DMMFQVSDLG PRFSEIQSVL  480
APSSNSDQEN IGSISIIRKE TGFSLYDGDD QYNIELPRKK KAKKNNPGTE ADSSPERSCF  540
VAHVTASNLH PHLPQDFTSS NSPTQIVSSY LSSEKQLATF TLAPVDVRNC RLRLPMQFTR  600
ENGINKPGKI YLLGKDGSKW LANLLLESRG RMTLGDGWKS FVKANGLKTG ESFTLKLNWE  660
DATPVLSLCP PECSIDSREG GECSETIEKE PLPIVLSCGK EISKEDENMK KESRSWERET  720
NLLIWRDSTV LSQNRCLTLT ITPDSLKHGR LRLPLEFMTD NSMNKPGEIT LLGKDGVKWL  780
VSLLLEKRGR MSLGKGEVSK QSGNKTRKAE NRSSSWELEK RRSSSSSEIQ NRTVILTLTP  840
EGVRDCKLQL PSQFMRTNGI MNPGKITLLG RSGMKWFAYL LSKDGTIALE NGWKGFCEAN  900
GVMVGESFVL ELIPTQDADH VFKFYSNYGY HIHNKCSFLA MSFNLLYLMS HMRFTKFLIE  960
ANAASTNQSM AKSTTLLSPQ FFHTLLPGFQ TQLTIPSDFF SNYIKDLETT TAELKSDSSL  1020
DITWKVKLTG RILNDGWGDF AVANNLHIGN VVLVRYEGGI VFHVSDLGPS FSQIQHINPP  1080
RQNIDAVTRN CSEAHSREDT SLIKKKLKPP VSYSSYSPCH KRFVTFTLPP EYATLCRLTL  1140
PNPFVKENGI SKPAEIRVLG KDGTKWPITL LLDKKGIMSF GKGWKEFVKA NGLETGFTLK  1200
LMWEDTTPSF SLCCPESASD RDEEECLESI KKQSLSIDRR IRDKPGKDEN NKEEKRSWER  1260
QKIRLRGRDV GDFEEVPINK KVKTDSHGTE AAFSSLDNSC FVAFVTDSSL DSDTLYLPRY  1320
FTSSNGLTRK CRKIVLIDGG GRSWAMDLSF NESSDIFYIS PGWRSFCDKN GLEAGGFFTF  1380
KLVGNEETPV LSFCPMESID SRSQKDCFEA HSTEVSNEEE DIERERNEEE TLMDIEEKKS  1440
KPEQRPVSYS SYSPCYKRFI TFTLPPYYAT LDKLTLPKLF VKENGINKPG EIYLLGKDGT  1500
KWLTRLLLDK KGLMRLGKGW KDFVKANGVE SGFTLKLIWE DTTPSFSLCC AESTGDKDEE  1560
EYLEAIKKQS LSIDRRIRDK ISKDENDKEE KMSWEREKIN MRGRDSTTSS QKQFLTLAIT  1620
PTSLRCNRMR LPIPFLRKSC MDKPGVIYLL GKEDTKWMAN LIQEGDGRMK LGKGWTAFAK  1680
ENEFKAGESV TLESIWEDET PMIRFLRTEA ESSKANKKES IYMEDTESRT RDSSTEIHAR  1740
FVTLTLKHED VKACMLILPS QFLKANGINK LGKITLLDEN EVELSAYLLS REGIVAVESG  1800
WESQSQKKRS TSLSCTYKKT VTTSLPQSSS TKMVQSVMEK HTLSMPDWSL LPEELLHMIC  1860
EMLVRIRLSL SFLPITPRES EDNMALPYRF QCSVKVELLF IVLNFQNLPK SFVRANGLET  1920
RCGDIVLMNE KVPMDSRLEI SSLSNSSKEE EHCFYVSLPP TENPKKMRAQ KLKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138754001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069548e-54AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026858e-54CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133977.10.0PREDICTED: B3 domain-containing protein REM-like 1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A078G7V60.0A0A078G7V6_BRANA; BnaC03g27030D protein
STRINGBo3g042160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]