PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138779001
Common NameGSBRNA2T00138779001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 409aa    MW: 45392.1 Da    PI: 5.6318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138779001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-2172163699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++l+++ l+lp +f+ ++g k  + ++++l+de+ rsW + l+++k+s+++ +t+GW++F+++ng keg  + Fkl++ ++++++++
  GSBRNA2T00138779001  72 VTASNLEEDSLCLPPDFTISNGFKR-KCRKIVLTDERERSWALDLRFNKSSDTFCITRGWRNFCEENGRKEGSLFKFKLMR-NGETPLLS 159
                          5788999999***********8775.567**************************************************98.67779999 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          v+ +
  GSBRNA2T00138779001 160 VCPT 163
                          9865 PP
2B354.71.8e-17192286199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl  ++g ++  +l  r +sgr+ l+kG k+F++angL+ g++++++l++ +++
  GSBRNA2T00138779001 192 FVTLTLTNDSLKSSRLYLPLPFLKENGMDKPG--MVTLLGKDGTRMLANL-LRENSGRMSLGKGLKDFARANGLNMGESFTLELIW-ENA 277
                          7788899********************99766..8***************.799999*****************************.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v++++++
  GSBRNA2T00138779001 278 TPVLSLLST 286
                          899988765 PP
3B361.91e-19294388199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++ ngL+ g++++++ ++ +++
  GSBRNA2T00138779001 294 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMTNL-LRESQGRMSLGKGWKDFARGNGLEIGESFTLESIW-EDA 379
                          7788899********************99665..8***************.6888888*************************999.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++++++ ++
  GSBRNA2T00138779001 380 TPMLSLSSR 388
                          899888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-2160163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2062163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.95867164IPR003340B3 DNA binding domain
CDDcd100171.43E-1967162No hitNo description
SMARTSM010192.1E-2568164IPR003340B3 DNA binding domain
PfamPF023625.7E-1972162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-18183282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18188284IPR015300DNA-binding pseudobarrel domain
CDDcd100177.32E-16191285No hitNo description
PfamPF023621.1E-16192285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66192287IPR003340B3 DNA binding domain
SMARTSM010192.4E-25192287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-20287389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21290390IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-17293385No hitNo description
PfamPF023623.4E-19294388IPR003340B3 DNA binding domain
PROSITE profilePS5086315.143294389IPR003340B3 DNA binding domain
SMARTSM010195.5E-28294389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLSGSGSTSC DTHTNNEDQA NMGYISRKKH PITTEEVDDG QDNTGHKKVK KNNSEAEADS  60
SSSDNSCFVA PVTASNLEED SLCLPPDFTI SNGFKRKCRK IVLTDERERS WALDLRFNKS  120
SDTFCITRGW RNFCEENGRK EGSLFKFKLM RNGETPLLSV CPTESISDGT QGGDENIPQI  180
CRDSTLPNPN RFVTLTLTND SLKSSRLYLP LPFLKENGMD KPGMVTLLGK DGTRMLANLL  240
RENSGRMSLG KGLKDFARAN GLNMGESFTL ELIWENATPV LSLLSTEFRS QNRFVTLTLT  300
QDSFKNSRLG LPLPFMRENG MNEPGTIALL GKDGTKWMTN LLRESQGRMS LGKGWKDFAR  360
GNGLEIGESF TLESIWEDAT PMLSLSSRES KREKVYVSAE PTIGNIEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.134201e-162leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138779001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734989.10.0B3 domain-containing protein REM12-like
SwissprotP0CAP41e-122REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A397ZY100.0A0A397ZY10_BRACM; Uncharacterized protein
STRINGBra000545.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.21e-115B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]