PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138788001

Common Name

GSBRNA2T00138788001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

YABBY

Protein Properties

Length: 165aa MW: 18338 Da PI: 9.6386

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138788001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	195	3.3e-60	6	153	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + +v+ ++ ++ ++++ +++ GSBRNA2T00138788001 6 TAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-------------QVTPYAMPEYGSSSRGNTK 82 5789**************************************99988887776653.............3444444444333333222 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ + + ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl GSBRNA2T00138788001 83 IS-----SRISARTISEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153 22.....233445556566799**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-69	7	153	IPR006780	YABBY protein
SuperFamily	SSF47095	3.8E-8	97	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	100	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MANSPTAAEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR 60 PNFQVTPYAM PEYGSSSRGN TKISSRISAR TISEQRIVNR PPEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138788001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	1e-178	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133935.1	1e-119	PREDICTED: axial regulator YABBY 5 isoform X1
Refseq	XP_009133936.1	1e-119	PREDICTED: axial regulator YABBY 5 isoform X1
Refseq	XP_013735000.1	1e-119	axial regulator YABBY 5
Refseq	XP_013735001.1	1e-119	axial regulator YABBY 5
Swissprot	Q8GW46	1e-111	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A398A5C0	1e-118	A0A398A5C0_BRACM; Uncharacterized protein
TrEMBL	M4C8L0	1e-118	M4C8L0_BRARP; Uncharacterized protein
STRING	Bra000538.1-P	1e-118	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-113	YABBY family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]