PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138797001
Common NameGSBRNA2T00138797001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 436aa    MW: 48533.3 Da    PI: 4.8116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138797001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  GSBRNA2T00138797001 22 KGPWTSAEDQLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                         79*******************************************996 PP
2Myb_DNA-binding43.57.4e-1475118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T  E+++ +++++ +G++ W++ a +++ gRt++++k++w++
  GSBRNA2T00138797001  75 KGSFTDKEEQRVIELHASMGNK-WARMATELP-GRTDNEIKNFWNT 118
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1481769IPR017930Myb domain
SuperFamilySSF466893.75E-2820116IPR009057Homeodomain-like
SMARTSM007175.7E-152171IPR001005SANT/Myb domain
PfamPF002493.9E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-242376IPR009057Homeodomain-like
CDDcd001678.20E-122469No hitNo description
PROSITE profilePS5129423.55370124IPR017930Myb domain
SMARTSM007171.1E-1374122IPR001005SANT/Myb domain
PfamPF002499.3E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2377122IPR009057Homeodomain-like
CDDcd001671.67E-977118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGKVRHDSGS GDEFAIDKTF HKGPWTSAED QLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGSFTD KEEQRVIELH ASMGNKWARM ATELPGRTDN EIKNFWNTRV  120
KRLQRLGLPI YPDEVREQAM NAAAQNGHNA DSLDGHHSQE SLELDCLEIP DFNFKHLQLN  180
GGSSFLQTLL SSIPTGNQMR QNPSLFQPNI YNVIASPYQQ PPNRKRFREP ETAFPYTGGY  240
ATDEQSAQLW NSPFVETTPG QFNVAPDSHF LGNATTYSSP SEPLILGAEK LELPSFQCFD  300
TQEDPGDWET PQHSNNPMQA IESDNTLVLS SPLTDQTPSE CPSAFCDGLL ESVVYGSSGE  360
KQTTTTDPDS PLLHQSSLLD HIEITPDTAN TAGHNSSAET DLVHFGPTSS DERRTSFESG  420
DWIRQLLGED RDYTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29221227106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138797001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765520.0KR076552.1 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133920.10.0PREDICTED: transcription factor MYB104-like
RefseqXP_018512711.10.0PREDICTED: transcription factor MYB104-like
TrEMBLA0A397ZZ370.0A0A397ZZ37_BRACM; Uncharacterized protein
STRINGBra000531.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-170myb domain protein 81
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]