PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138800001
Common NameGSBRNA2T00138800001, LOC106438416
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 571aa    MW: 64983.6 Da    PI: 6.2106
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN34992.4e-152484281354
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          +el++rmw+d+m+lkrlke++ + +  ke+   +k++++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+
  GSBRNA2T00138800001  48 DELERRMWRDKMRLKRLKEQQSK-C--KEEVDASKQQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDN 134
                          79******************998.4..44434466789**************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          Lr+WWk+kv+fdrngpaai+kyqa+n i++g++++++    ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+G+e+w
  GSBRNA2T00138800001 135 LREWWKDKVRFDRNGPAAIAKYQAENSIAGGSNDCNSLVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGREEW 224
                          ************************************99**************************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX....X CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss....s 266
                          w++lgl+ dq  ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee  +++++++s     s
  GSBRNA2T00138800001 225 WPQLGLPSDQASPPYKKPHDLKKAWKVGVLTAVIKHMSPDITKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVVARELYPESClplsS 314
                          ***********************************************************************************5554545 PP

                          XXXXXXXXXXXXXXXXXXX.XXXXXX.X.XXXXXXXXX.........................XXXXXXXXXXXXXXXXXXXXX...... CS
                 EIN3 267 lrkqspkvtlsceqkedve.gkkeskik.hvqavktta.........................gfpvvrkrkkkpsesakvsskevsrtc 329
                          ++ +s ++ +++ +++dve  +ke++++ + ++ k  +                          ++v + ++k++ + + ++ ++   tc
  GSBRNA2T00138800001 315 SSVGSGSLLINDCSEYDVEcFDKEQQQSfDGEELKP-EivvsmnhptsfgicrmqqfpvkeevVATVGNLKRKQNNDLNVMMMERPGFTC 403
                          556****************95555553313444444.25899999999***********9998555555555566777777777788*** PP

                          XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 330 qssqfrgsetelifadknsisqney 354
                          ++ q+++s+ +l+f+d++s++++++
  GSBRNA2T00138800001 404 ENGQCPHSKINLGFHDRSSRDNHQM 428
                          ***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.5E-13048298No hitNo description
Gene3DG3DSA:1.10.3180.104.3E-74173308IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.32E-61177301IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MMMFNEMGMY GNMDLFSSTS LGETDVCPFP KDHSVVEDDY TDDEVDVDEL ERRMWRDKMR  60
LKRLKEQQSK CKEEVDASKQ QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI  120
IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAIAKYQAEN SIAGGSNDCN SLVGPTPHTL  180
QELQDTTLGS LLSALMQHCD PPQRRFPLEK GVPPPWWPNG REEWWPQLGL PSDQASPPYK  240
KPHDLKKAWK VGVLTAVIKH MSPDITKIRK LVRQSKCLQD KMTAKESATW LAIINQEEVV  300
ARELYPESCL PLSSSSVGSG SLLINDCSEY DVECFDKEQQ QSFDGEELKP EIVVSMNHPT  360
SFGICRMQQF PVKEEVVATV GNLKRKQNND LNVMMMERPG FTCENGQCPH SKINLGFHDR  420
SSRDNHQMVC PYRDNRLAYG VKPVVVSQQS QPFPQPVQPV DLSGYGVPKN GQKMITELMA  480
MYDRNVQSSQ ASNQSMIINS TAAQNYQEHQ LSFNRNQMFM QQGNSEINNQ SQMVFDSTSF  540
DIASFDYKND WQAGVMEGMG KQQQDVSIWF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-851763082134Protein ETHYLENE INSENSITIVE 3
4zds_B5e-851763082134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.184190.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138800001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893330.0AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735014.10.0ETHYLENE INSENSITIVE 3-like 1 protein
RefseqXP_013735015.10.0ETHYLENE INSENSITIVE 3-like 1 protein
RefseqXP_013735016.10.0ETHYLENE INSENSITIVE 3-like 1 protein
RefseqXP_013735017.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLA0A0D3B7E60.0A0A0D3B7E6_BRAOL; Uncharacterized protein
STRINGBo3g041690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21352879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.10.0ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  5. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  6. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  7. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  8. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  9. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  10. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  11. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]