PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138967001
Common NameGSBRNA2T00138967001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 591aa    MW: 65089.2 Da    PI: 5.5629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138967001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.88e-932355892374
                 GRAS   2 velLlecAeavss.gdle.laqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                          +e+L+++Ae +++ gd++ laq +Larl+++ +s++    p++R+a+++ eAL + +++       a pp   +++n + ++aa+++fse
  GSBRNA2T00138967001 235 IEQLFNAAELIATtGDHTiLAQGILARLNHHlSSSYNnkAPFHRAASHISEALLSLVHD-------AAPP-LLTPENLILRIAAYRTFSE 316
                          789*******998655555***********9755444246******************9.......4444.444589************* PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                          +sP+l+f ++taNq Ile   g er+H+iDfd+++G+QW +L+q+La ++++   l++T++++p s+  ++ el+ t+e+L++fA el+v
  GSBRNA2T00138967001 317 TSPFLQFVNFTANQSILEL--GFERIHVIDFDVGYGGQWSSLMQELARKRGS--CLKVTVFAPPPSSvsDEFELRFTEENLRSFAGELKV 402
                          ******************7..99************************98777..9*******99888899******************** PP

                 GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+
  GSBRNA2T00138967001 403 PFEMELLSLELLLNPAYWPLSLRSseKEAVAVNLPVSSVDSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQ 484
                          ******988888888999998887779********9666665........5667************************************ PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          y+++l++sl+a+   +s+e+++vEr++++++i++++ +++++     e+   Wr+ ++++GF+p++ls++a++qa++l+++ +++g++ve
  GSBRNA2T00138967001 485 YHTTLLESLDAN---QSQEDSSVERFWVRPSIEKLLVKRHRW----IERSPPWRSLFTQCGFTPASLSQTAETQAECLMQRNPVRGFHVE 567
                          ************...8**************************....89999*************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          +++ slv++W++++Lv+vSaW+
  GSBRNA2T00138967001 568 KRQSSLVMCWQRKELVTVSAWK 589
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.296209569IPR005202Transcription factor GRAS
PfamPF035142.8E-90235589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MPLSFERFQG EGVFSVSSFY SDSHKTRFNQ DKTGIEEERE DLGYVFRGGL QEPTSVLDAL  60
RSPSPLASHS STTTNTTLSS SHGGGAVTVT ATTTTAGDDK CSQISLDDLD GVISPDQEQS  120
ILRLIMDPGS GFGVLDPCFG FGSGSAPVSD GSNPLLPCGF PFNEQTHQIP NQESLFSNPP  180
SSPPTKRFNS GSHQPVFPFS DPVPVQQYQF PVQFHPQQIS PSSSSSPAAA LSVIIEQLFN  240
AAELIATTGD HTILAQGILA RLNHHLSSSY NNKAPFHRAA SHISEALLSL VHDAAPPLLT  300
PENLILRIAA YRTFSETSPF LQFVNFTANQ SILELGFERI HVIDFDVGYG GQWSSLMQEL  360
ARKRGSCLKV TVFAPPPSSV SDEFELRFTE ENLRSFAGEL KVPFEMELLS LELLLNPAYW  420
PLSLRSSEKE AVAVNLPVSS VDSGYLPLIL RFLKQISPNV VVCSDRGCDR NDAPFPNAVI  480
HALQYHTTLL ESLDANQSQE DSSVERFWVR PSIEKLLVKR HRWIERSPPW RSLFTQCGFT  540
PASLSQTAET QAECLMQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2731158980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.244080.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138967001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734791.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A3P6A6300.0A0A3P6A630_BRACM; Uncharacterized protein
STRINGBra000375.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  4. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]