PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138972001
Common NameGSBRNA2T00138972001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 299aa    MW: 34057.7 Da    PI: 7.3298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05183205123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cgk+F++   L  H  +H
  GSBRNA2T00138972001 183 FKCETCGKVFNSYQALGGHRASH 205
                          89**********99999998887 PP
2zf-C2H212.70.00039232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00138972001 232 HQCPICFRVFTSGQALGGHKRSH 254
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-9326No hitNo description
PfamPF139120.0011327IPR007087Zinc finger, C2H2
SMARTSM003550.067426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-9178205No hitNo description
PfamPF139129.5E-12182207IPR007087Zinc finger, C2H2
SMARTSM003550.015183205IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4183211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-5228257No hitNo description
PfamPF139121.8E-10231254IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473232259IPR007087Zinc finger, C2H2
SMARTSM003550.08232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MERYKCRFCF KSFLNGRALG GHMRSHMLTL PSKRELYELT ERPSQLSEET ESDASSSSDE  60
QEEEEDHVNC GGFESETESS RMNPTRKRSK RTRKLGSLDF DFKKVKTSQP GGEVVTEPEH  120
HSSASDTTTE EDLAFCLIML SRDKWKQQKN KTIVVEEEDH ETDDEREDYK SSKNRGGRGR  180
GRFKCETCGK VFNSYQALGG HRASHKKNKT FTTMTSTKTE HEKTLTESEK VHQCPICFRV  240
FTSGQALGGH KRSHGSNNIG SRRELSVNQK VSVKQRMIDL NLPAPNEDDE TSVVFNEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138972001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734794.10.0zinc finger protein ZAT4-like
SwissprotQ9SHD01e-117ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A3P5ZJT41e-175A0A3P5ZJT4_BRACM; Uncharacterized protein
STRINGBra000372.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]