PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00139167001

Common Name

GSBRNA2T00139167001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 336aa MW: 38348.6 Da PI: 6.5591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00139167001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	131	177	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L GSBRNA2T00139167001 131 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 177 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-4	131	180	No hit	No description
Pfam	PF00010	1.1E-11	131	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	132	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	132	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-13	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MYAMKEEDRL QTFHNLQDYQ DQFLLHLHPQ NHPWSSLPSF DPTHFPSNPT RYPDPVHYFN 60 KRASSSSSFD YTDGFVSPPM DNHHHQNHLR ILSEALGPIM RRGSSFGFDG EVMGKMSAQE 120 VMDAKALAAS KSHSEAERRR RERINTHLAK LRSILPNTTK TDKASLLAEV IQHMKELKRQ 180 TSLVTETCQV PTESDDLTVD STYNDEEGNL VIRASFCCGD RTDLIHDVIN ALKSLHLRTL 240 KAEIATVGGR VKNVLFLSRD DHEDDGFEYR NDAVEHDDEE KRYNRVSSIE EALKAVIEKC 300 VNNNDENNDN NNLEKSSSGS IKRRRTSKMA NRCYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERRRRE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24033	0.0	vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: At the globular stage, expressed in cells adjacent to the hypophysis and at later embryonic stages, specific for vascular tissues. {ECO:0000269\|PubMed:20220754}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269\|PubMed:20220754}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00139167001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058840	0.0	AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBank	AY079033	0.0	AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBank	AY086383	0.0	AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBank	DQ205679	0.0	DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595350.1	0.0	PREDICTED: transcription factor AIG1
Swissprot	Q9LS08	0.0	BH032_ARATH; Transcription factor AIG1
TrEMBL	A0A3P6F4W5	0.0	A0A3P6F4W5_BRAOL; Uncharacterized protein
STRING	Bo7g081980.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13949	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	1e-180	basic helix-loop-helix 32

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Jost R, et al. Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. J. Exp. Bot., 2015. 66(9): p. 2501-14 [PMID:25697796] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]