PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00139488001

Common Name

GSBRNA2T00139488001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 133aa MW: 14571.5 Da PI: 10.3296

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00139488001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.8e-15	3	82	4	83
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 ++ v L+ea++ ++ +r+klk+++We+v+k++ ++++ ++++qCk+k+e+++kry+ + +++++ ss ++ f+ GSBRNA2T00139488001 3 RRAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATANGS----SSPWKCFH 82 57899****************************87766777788999***************999974....55677776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-17	4	82	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MERRAVSSLL EAYETKWVLR NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM 60 KKRYRSESAT ANGSSSPWKC FHLCPPSASA CFASELLCSF ALTRTSVAGG DSSAAATSCC 120 SDVSRIQRRR HG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00139488001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132971	4e-62	AL132971.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T12E18.
GenBank	AL138656	4e-62	AL138656.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T14E10.
GenBank	AY084391	4e-62	AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBank	AY140041	4e-62	AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBank	BT006322	4e-62	BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
GenBank	CP002686	4e-62	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600436.1	6e-42	PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBL	A0A0D3DQF0	8e-91	A0A0D3DQF0_BRAOL; Uncharacterized protein
STRING	Bo8g068640.1	1e-91	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-43	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]