PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139538001
Common NameGSBRNA2T00139538001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 146aa    MW: 17552.2 Da    PI: 9.5159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139538001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.5e-2071322110
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee...........vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk..rknr 76 
                           +GfrFhP deelv +yL +k+++ +++++            +ike++++  ePw ++ + ++  +ekewyfF++++ ++++++  r + 
  GSBRNA2T00139538001   7 SKGFRFHPADEELVRHYLMRKTSSPDFRCFIktmevfdnfqcFIKELEMFAKEPWLMElErSAFYREKEWYFFVRKAWSKREEQnlRFSL 96 
                          68***********************944444445566677656************9984323334899*******988766443113333 PP

                  NAM  77 atksgyWkatgkdkevlsk..kgelvglkktLvfyk 110
                            k+  W+  g+  +v+++   ++ +glk+t+ f  
  GSBRNA2T00139538001  97 DGKKKQWRINGEVSNVVDNeaAKRIIGLKTTFSFNL 132
                          456778***********98666777********974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-184135IPR003441NAC domain
PROSITE profilePS5100522.2076145IPR003441NAC domain
PfamPF023656.7E-138133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSEVMLSKGF RFHPADEELV RHYLMRKTSS PDFRCFIKTM EVFDNFQCFI KELEMFAKEP  60
WLMELERSAF YREKEWYFFV RKAWSKREEQ NLRFSLDGKK KQWRINGEVS NVVDNEAAKR  120
IIGLKTTFSF NLSQECSFKK RLESG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00150DAPTransfer from AT1G19040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139538001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566505.11e-74protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A178WC351e-36A0A178WC35_ARATH; Uncharacterized protein
STRINGAT1G19040.19e-16(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2625233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19040.19e-20NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]