PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139547001
Common NameGSBRNA2T00139547001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 315aa    MW: 34782.4 Da    PI: 5.0841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139547001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-1061102345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w+
  GSBRNA2T00139547001  61 SFTPEEEDLIIKMHAAMGSRLWPLIAQHLP-GKTEEEVKMVWN 102
                          79****************************.********8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.74E-1241113IPR009057Homeodomain-like
PROSITE profilePS5129414.55754109IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-1555109IPR009057Homeodomain-like
SMARTSM007171.5E-958107IPR001005SANT/Myb domain
PfamPF002499.7E-1061103IPR001005SANT/Myb domain
CDDcd001672.80E-961105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTDEDNAS QKFAFASSSK NGSTPKKIGL RRCGKSCRVR KTDNAGAKHE  60
SFTPEEEDLI IKMHAAMGSR LWPLIAQHLP GKTEEEVKMV WNSKLKKKLS QMGIDHVTHR  120
PFSHVLAEYG NINGGGGGTL NPNPMNQTGS LGPNPSLNED SHQQQQQQSN DSGDLMFHLQ  180
AIKLMTESSN QVKPESTFMY ASSSSSNSSP PLFSSTCSTI AQENSEVNFT WSDFLLDQET  240
FNENQQNYPD QELDNLFGNE FSEAEAVATV ANTSAPDARI EEESLSNGFV ESIIAKEKEL  300
FLGFPSYLDQ PFHF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.253151e-141flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139547001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605421.10.0PREDICTED: transcription factor MYB35 isoform X1
TrEMBLA0A3P6FEI30.0A0A3P6FEI3_BRAOL; Uncharacterized protein
STRINGBo8g068210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-153MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]