PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139571001
Common NameGSBRNA2T00139571001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 519aa    MW: 59172.1 Da    PI: 6.9767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139571001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.2e-23953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk
  GSBRNA2T00139571001  9 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53
                         6889****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.838161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-27295IPR002100Transcription factor, MADS-box
CDDcd002661.62E-27282No hitNo description
PRINTSPR004041.5E-18323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-201257IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEVAYRP  120
SLGLSNQVAI SQAQLMECHR RLSCWTNIDR IENTEHLNLL EESLRKSIER IQFHKEHYTK  180
NQLLPLDCTT TQFHSGIQLP LAMEGNKSMQ EAHSMSWLPN NDNQETILPG ESSFLPHREM  240
DGVNPIYSNG FFEPVKQEDQ MCSNQGQQFE QLEQQGHGCL GLQQIGEEFS YRSSFGTTLG  300
MDEDQEKKIK SEMELNNLQQ QQQQQQQDPS SMYNPTANNG GCFQNPHDQS MFGTDHHHYH  360
YQHHQNWVPG SMFGQASYNQ VCVVCDVPRF VVQSIGADQS IGADQHGYQD VLNNFTEIRS  420
SDRTDQTDRA VPRASRLELR LEPRPDNRTD RAGARLPRPT RHSKSHGRAR LSLGHEEIED  480
VHAFSSGGPS GQSRKHSYLY PVHPSGSDEH EHYLKGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-14196194MEF2C
5f28_B8e-14196194MEF2C
5f28_C8e-14196194MEF2C
5f28_D8e-14196194MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139571001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682304.10.0agamous-like MADS-box protein AGL65
RefseqXP_013682306.10.0agamous-like MADS-box protein AGL65
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0D3DQ920.0A0A0D3DQ92_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G8500.0A0A3P6G850_BRAOL; Uncharacterized protein
STRINGBo8g068060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]