PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139574001
Common NameGSBRNA2T00139574001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 271aa    MW: 30455.1 Da    PI: 7.0553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139574001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                         rg WT+eEd +lv ++  +G g+W+  +++ g + R++k+c++rw++yl
  GSBRNA2T00139574001 14 RGEWTEEEDRKLVAYIDVYGIGDWRFLPHKAGsLQRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding53.55.4e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T+ E++ ++  +  lG++ W+tIa+ m+ gR+++++k++w++ 
  GSBRNA2T00139574001  68 KGKFTPHEEQVIISFHSILGNR-WATIAQQMP-GRSDNDIKNHWNSC 112
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.898962IPR017930Myb domain
SuperFamilySSF466894.23E-2812109IPR009057Homeodomain-like
SMARTSM007174.2E-121364IPR001005SANT/Myb domain
PfamPF002491.0E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-221569IPR009057Homeodomain-like
CDDcd001675.62E-101662No hitNo description
PROSITE profilePS5129424.75363117IPR017930Myb domain
SMARTSM007173.7E-1467115IPR001005SANT/Myb domain
PfamPF002492.0E-1468112IPR001005SANT/Myb domain
CDDcd001672.30E-970110No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRATWFEAD GTKRGEWTEE EDRKLVAYID VYGIGDWRFL PHKAGSLQRC GKSCRLRWLN  60
YLRPGVKKGK FTPHEEQVII SFHSILGNRW ATIAQQMPGR SDNDIKNHWN SCLKKRLERN  120
GIDPMTHQPI INLDVKTQSF NTDCGSSSCS TASPSSSSFS SGSSRLLNKI ATGISSRQHS  180
VDRIKNILSD PTITSINGRE EGLELLKIDH GKMLASDDQE DDFLMWDEEK TRHFMEEIGV  240
MDFHTNGVYN PSSSAQYGVY ETGLLGGHLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141187109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139574001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680824.10.0transcription factor MYB41-like
TrEMBLA0A0D3DQ890.0A0A0D3DQ89_BRAOL; Uncharacterized protein
STRINGBo8g068030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-86myb domain protein 47
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]